Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00570 ATGTCACAACAAGACTACCACCAGGCGGCGGCGGCGGCTGCGGCGGCGGCAAGTTTCTTCACACCCTTCACGAATGGCTTTGACAGATCCTCCACCACCGCCGTTGCCTCCCACCAAGACCCTCAACACCAACACTACAACCACATAGCCCACCAGATCCGAAAGGAGAAGCTCCGCCTCCAAGGCTTAGACCCGCCACCTCCTCAGCCGTCCTTGGTCGGAATTGAGGAGGAGGACGACGACCAATCTGCTGGCGCTGCTGCCCTTCACCATGTCTATGACTCCACCGGAATTTTGTCTGAAATGTTCAATTTTCCTCAGCCTCCACGGCCTCAAGCTGAGTGGTATGGCAACCGGCAAGAGATTAACGCCGGTGACTCGGCAGTGGCCATGCAGCTTTTTCTGATGAACCCAAACCCTCGCTCACCGCCACCGCCGCCCGTGTCGTCAACCCTCCATATGCTTCTTCCAAACCCTTCTTCAGGAGGGTCTTTTGGACAATTCACATGGGGGGTAGTTCCGGAACAAGAAACAGGAGGAGGAGGAGGAGACTATTCTTCCTCAAACCCTAACGAAGGCCGTCTTTCTTTGTCACTATCCTCGTCCATAGAAGCTGCAAAAGCGGAGGAATTGAGAATGGGTGACAGCGGGTTAGTTTATCAAAACCAACATCACCCTCAACAAGTCCATGTCGGAATTGGGTCTTCTTCTAATTCTTCGTTGGGAGTTGTCAACTTGTTGAGAAACTCAAAGTATGTCAAACCCGCACGAGAATTACTGGAGGAGTTTTGTAGCGTTGGAAGAGATCAGCTTAAAAATAATAATAACAAATTGAACAAGTCAAATTTGACGTCGAACTCCCATGGCGGGGACGGTGGCGGAGTCTCGTCCTCGACGTCAAAGGATCAACCGCAGCCACCGCCACCGCCTGCTTTGTCAGCCGCTGATAGAAATGAACATCAAAGGAGGAAGGTCAAATTGTTATCCATGCTTGATGAGGTGGATGGAAGATACAACCATTACTGCGAGCAGATGCAAATGGTGGTGAATTCATTCGATGTCGTGATGGGGTTCGGGGCAGCGGTGCCATACACGGTGTTGGCGCAGAATGCGATGTCGAGGCATTTCAGGTGTTTGAAGGACGCCATAACAGCGCAGCTGAAGCATAGTTGCGAGATGTTGGGTGAGAAGGATGGGGGAGGAGGTGGAAGAGGAGGGTCAGGAATAACTAAGGGAGAGACTCCAAGGCTTAAGCTGTTGGAGCAAAGGTTGAGGCAGCAACGAGCCTTCCACCAAATGGGCATGATGGAACAAGAAGCTTGGCGTCCCCAACGCGGCTTGCCCGAACGCTCTGTCAACATCTTGCGTGCCTGGCTCTTCGAGCACTTTCTTCACCCGTACCCTAGTGATGGTGATAAGCATTTGTTGGCGAGACAGACAGGTTTATCAAGAAATCAGGTATCCAACTGGTTTATTAATGCCAGGGTTCGGCTGTGGAAACCCATGGTGGAAGACATGTATCAACAAGAAGCCAAACAACACCAACAAGATGATGATCATCATAATACTATTAATGATAATAACAATACAGATGAGGACACACAATCCAATCCTCCGCCCACTTCCTCCGCCGCACCACCACCACCACCCTTCTCCTCCTCCTCCTCCTCCGCATCCGCTGCCGTAACCCAGGCGGCTGTGGCGAACTGCTTTCCGGCCACCCAGTATGAGTCAGAGCTGCAGGACACGTGTCGGCGTGTCAGCGTTCTCGCTGCACCTGATCAGCAGATGAGGACCACAAGCGGCTCAGCCACGTCTGACATCCCCGGGCCCACCAGACTCATAAGATTCGGGACCACAGCGGGTGACGTGTCGCTGACACTAGGTTTACGCCACGCCGGAAATATCCCCGACAACAACCCTTCTTTCTCCCTCAGATCCGAGTTCGGAGGCTGTTAA 1959 52.63 MSQQDYHQAAAAAAAAASFFTPFTNGFDRSSTTAVASHQDPQHQHYNHIAHQIRKEKLRLQGLDPPPPQPSLVGIEEEDDDQSAGAAALHHVYDSTGILSEMFNFPQPPRPQAEWYGNRQEINAGDSAVAMQLFLMNPNPRSPPPPPVSSTLHMLLPNPSSGGSFGQFTWGVVPEQETGGGGGDYSSSNPNEGRLSLSLSSSIEAAKAEELRMGDSGLVYQNQHHPQQVHVGIGSSSNSSLGVVNLLRNSKYVKPARELLEEFCSVGRDQLKNNNNKLNKSNLTSNSHGGDGGGVSSSTSKDQPQPPPPPALSAADRNEHQRRKVKLLSMLDEVDGRYNHYCEQMQMVVNSFDVVMGFGAAVPYTVLAQNAMSRHFRCLKDAITAQLKHSCEMLGEKDGGGGGRGGSGITKGETPRLKLLEQRLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDGDKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQEAKQHQQDDDHHNTINDNNNTDEDTQSNPPPTSSAAPPPPPFSSSSSSASAAVTQAAVANCFPATQYESELQDTCRRVSVLAAPDQQMRTTSGSATSDIPGPTRLIRFGTTAGDVSLTLGLRHAGNIPDNNPSFSLRSEFGGC 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3314129 3318836 - CmoCh02G005700.1 Cmo02g00570 376167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00570 652 MobiDBLite consensus disorder prediction 508 557 - -
Cmo02g00570 652 SUPERFAMILY Homeodomain-like 442 508 IPR009057 -
Cmo02g00570 652 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 74 639 - -
Cmo02g00570 652 MobiDBLite consensus disorder prediction 395 414 - -
Cmo02g00570 652 Pfam Associated with HOX 247 384 IPR006563 -
Cmo02g00570 652 CDD homeodomain 441 502 IPR001356 GO:0003677
Cmo02g00570 652 ProSiteProfiles 'Homeobox' domain profile. 438 501 IPR001356 GO:0003677
Cmo02g00570 652 MobiDBLite consensus disorder prediction 510 527 - -
Cmo02g00570 652 Pfam Homeobox KN domain 458 497 IPR008422 GO:0003677|GO:0006355
Cmo02g00570 652 SMART prehox3 241 385 IPR006563 -
Cmo02g00570 652 SMART HOX_1 441 505 IPR001356 GO:0003677
Cmo02g00570 652 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 74 639 - -
Cmo02g00570 652 MobiDBLite consensus disorder prediction 271 321 - -
Cmo02g00570 652 Gene3D - 444 506 - -
Cmo02g00570 652 MobiDBLite consensus disorder prediction 271 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00570 Cmo-Chr2:3314129 Cmo02g01465 Cmo-Chr2:8606548 1.84E-90 dispersed
Cmo07g00767 Cmo-Chr7:3472111 Cmo02g00570 Cmo-Chr2:3314129 6.77E-38 dispersed
Cmo07g00766 Cmo-Chr7:3469757 Cmo02g00570 Cmo-Chr2:3314129 1.31E-108 transposed
Cmo02g00570 Cmo-Chr2:3314129 Cmo20g01176 Cmo-Chr20:11619666 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9229 PF07526 POX 6.60E-50 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00570 - - cmax:111470356 877.856