Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00585 ATGGACGACATCGACATCCTCAAATCGACACTATCACCTTCCAACTCCATCGACATGTCGTCCACAATCCTCCTCAACAACAACAACAGCTCCCACTACCCTCCACTCCCCTTCTTCTCCGACTTCTCATCTCCCTCCTTCCACACCGCACAGCCAGTGCTGCCGAACCAACAGAACCGGCAGAAGCGCGGCGGCGGCGGGGGCGGGGGCGGGGGCGGGGGCGGGGGAATGGCAGCAATGAGAGAGATGATATTCCGAATAGCAGCAATGCAGCCAATACAAATAGACCCAGAGGAGATAAAGGCGCCAAAGCGGCGAAACGTGAGAATCTCGAAGGACCCACAGAGCGTGGCGGCGCGGCAGCGGAGGGAGAGAATCAGCCAGAAGATTAGGATTCTGCAGCGGCTGGTGCCTGGGGGAACTAAGATGGACACGGCGTCGATGCTGGATGAGGCGGTTCATTATGTGAAGTTCTTGAAGAGGCAAGTGCAAACGCTGGAGCAGGCAGGGTTTCACAATGCTAATACTACTAATAATAATAACAACTGTCCTAACCTTAGCTACTCTTCTGCGCTTTTCAAAGCTTGCCAAATGCCCCACGCTCCATCTATGCCTGGCTCTTTGCAAATGCATTGA 636 54.4 MDDIDILKSTLSPSNSIDMSSTILLNNNNSSHYPPLPFFSDFSSPSFHTAQPVLPNQQNRQKRGGGGGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNANTTNNNNNCPNLSYSSALFKACQMPHAPSMPGSLQMH 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3473200 3473835 - CmoCh02G005850.1 Cmo02g00585 376182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00585 211 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 159 IPR011598 GO:0046983
Cmo02g00585 211 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 76 200 - -
Cmo02g00585 211 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 76 200 IPR045843 GO:0003700|GO:0006355
Cmo02g00585 211 MobiDBLite consensus disorder prediction 47 77 - -
Cmo02g00585 211 SMART finulus 116 165 IPR011598 GO:0046983
Cmo02g00585 211 MobiDBLite consensus disorder prediction 47 63 - -
Cmo02g00585 211 Pfam Helix-loop-helix DNA-binding domain 119 159 IPR011598 GO:0046983
Cmo02g00585 211 Coils Coil 149 169 - -
Cmo02g00585 211 CDD bHLH_AtIND_like 111 167 - -
Cmo02g00585 211 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 169 IPR036638 GO:0046983
Cmo02g00585 211 Gene3D - 109 182 IPR036638 GO:0046983
Cmo02g00585 211 Gene3D - 53 100 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00080 Cmo-Chr1:369950 Cmo02g00585 Cmo-Chr2:3473200 1.58E-36 dispersed
Cmo02g00585 Cmo-Chr2:3473200 Cmo07g00819 Cmo-Chr7:3798815 1.40E-45 dispersed
Cmo03g00351 Cmo-Chr3:4520340 Cmo02g00585 Cmo-Chr2:3473200 4.11E-24 dispersed
Cmo02g00585 Cmo-Chr2:3473200 Cmo03g01075 Cmo-Chr3:8046980 4.32E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9231 PF00010 HLH 2.50E-07 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00585 - - cmos:111451594 369.392