Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00593 ATGAGGCTCTTCTCCTCCTCAACTTTCTCGCTTTCTTCTCTCTGTTCTTCTTCTCCACCGCGCACCCTCTTGCTTCACTTTTCTCAATTTTCAGCTTCTTTTTCTTCCAGTAATTACTCTTTCCCTTCCTCATCTTCTTCTAGGCGCCACGACGAAGAGTCTCGATATGTCAGGGTTTCCGTTTGGTGGGACTTCGAGAATTGCAACATTCCTGCTGGTGTTAACGTGTTTAAGGTCGCCCATTTGATCACTGCCGCTGTCAGGGCCAATGGTATCAAAGGTCCGGTTCAAATTACTGCTTTCGGTGACATTTTGCAGCTCTCAAGGACCAACCAGGAGGCTCTCTCGTCTACTGGAATTAGCCTTACCCACATTCCTCAAGGTGGTAAAAACAGTGCTGATAGGTCTCTTCTTGTAGATCTCATGTGTTGGGTTTCACAAAATCCTCCACCAGCACATCTTTTTCTAATTTCTGGTGACAGGGACTTCGCCAGCATTTTGCACCGCTTAAGAATGAATAACTACAATGTGTTGCTAGCAAGCCCTGAAAGTGCTCCTGGTGTTTTATGCAGTGCTGCAAGCATCATGTGGCATTGGAATGCTTTGGTTAAAGGGGAAAATCTAGTCGGAAGGCATTTTAATCAACCACCTGATGGACCGTATGGTTCTTGGTATGGCCATTATAAAGTTCCTCTTGAAGACCCATTTCCAGTTAATGAGCAAGTATCTTCTATTAGATCCGAGGAGGTTTCTGAGATCAGTTCAGATCCTAAGCCTCTTCCCATTCCAAGGGCAGTCATTAGGGAAATACGTTACATTTTGAAATTATATCCAAAAGGAATCTCCATTACAGATCTCCGATCAGAGTTGGGAAAGAGTAAAATATCTATAGATAGGGACTATTATGGTTACAAAAAGTTTTCACGCTTTCTATTGTCAATGCCACATACTTTAAAGCTTCAAACAAATGGTGATGGCCAATTGATCGTCCGAATTGTCACTCCAAGGACCATAGAGCCATTCGAGTCCAGTAGAGGTACATCTGATAATGGCACTGAAGAGCAGGATCGTAATCTGATTGCAAAGTTAAACAATAACGGTTCCTCACCAGAATCGACGAGTGTACCACTCGTTCGATCTAGTGAACTAAATGCTCAAGACAGGCCAGAGAAGGTGCAACCATCTTATGAATTAGTTAAGTCTACTGGTGAAGCTATGGGAGGGGAACCATCAACATGGCCGGTCTCTGAGCCACATGTTATGGAAGATTCAAAGCAGACTAGTAAATTTGAAGCTGACAATAATATGATTCCCTCAATTGGACAGCATTCTGAGGCCAAGACGGGGTTTTTTAGAAGAATATGGAGAAGGTTTGTTGTAGGTAGCAAAGACCATAATTCTGAAAATGGAAGTCATCACATTTCTGAAAAATGTTCCACATCAGATGATGCTTCTAAGCAGAAAAGTTGTGGCCATGTGACGAATTATTCTAATCAGAACCTTGGAGAAGCAAAAAGTGAAGGAAAAACTGTAAAGCCAATGAGTCAAGATGCTAATTCAGTGCATCCAGTTTCAAATTCAGCTGATCGTGAGCCTGCTAAGCTTCAAAAAACAGCTGTAGTTGCTAGTGCATATGATGATAAATCAAGATCTAGGCCAGGAGTACTTAGTAGCATTAGAAATTGGTTCAAGATTCGGGAAAATGATACTGAGACTGGTAAAGAAAGCGAGCAGTGTTGCGAACAGAACCAGTTAAAAAATGAATGTGGGAAACACCAACTTTTTTCCAGCAGTTCTTTTTGGCAGGACATGCAATCCTTTATTGAAACACCTAAAGGAGTGGAGCTCATTTTGCAGTCAAAAACCAGGTCAGAGATGGCTCAGAAACTGCTAGAGGAAGGACCTTTGGTTCTTAAATCCTTAAGCACTAGCGAGCTCTTCGACTTTATAGAATCGTTAATATCAGATAAGAAATGGCTCGTGGAATGCCCCTCTGAAACAAATCCTTTCAAGGTCACTCTCTCTACTGCTGAGAAAAGCTCTTGCACGAAACCCCTGCATCGTGCAAATGGGTTGACATCAATCTTTATGAACAGAGTATCACAGCCCAGTTTACAGGGATCTTCAGAACATGATTCAGATTCAGATAAGAAAAATGAAAATGTTCCTCAAGCTGGAATTTCTACCACTATGACTAAAAGCAAGTTTCCAGAGAGGACAAGAAGCGAAATATTATGCGACTGTCAAAATCTTGTGGACGAAATCTTGAGAGAACACCCAGAAGGATATAATATGGGGGCTTTCAGAAAACTGTTTCTTGAGAAGTACGGATATCATCTTGACTTGCAGAAGCTTGGTTACCCAAAGTTGGCATCCCTGCTACAGATAATGCCAGGAGTGATAATAGAATCCACTTTTATAGTTCCCACCGGTAAGGTCCCAAAGGTTTCCCATGTTGTAGCGAACTCTGATAACGAATCATCTGACCTGCCTCGAAAGGATGATGATTTTGAGTCAACATGGGAAGAATTAGGTCCAGCATTCACAGATTGCAGGAGCAGAAACGAAGATGAATCGACATCGAGTAGCGAAACAGCAGAAGCAACAGAAAAACGACCAAAAGTTTGTTATGAACCTGTGGTTTTAGAGGATGAATCATCAACAGAGTCTGATGGAGAGTCTTGTCCTACTACACAGAGATCAGAAGAGCAAGCAAAGCCACAAACAAATAAGGAAGAAAGCCCATTACTACAGATCCTTGATTCATGGTATGGCAACAAAGAAGACAATAGTAGGAAAAACAAGTCAGAAAACAGCGACGAGATGAACGATTGTTTTGAAAATAGTTTGAAGGTCTCTAGTTTAACAGCCAAAAATGAAGCAAATACAGGAAGCTTTGCTCGTAAGCATAGACATCAAAAGAGCTATTCTTTTGTTTTAGACACGGATGAAAATGACAAGGAAAAGCTGATTGATGGGATTTTGGATCTGCATCTGCTGAAGAACGATTGGGGTGTCACAGATTATCCAATAGTCCCAGGGCATGAGATTGTTGGTGTTGTGACTTCTGTTGGGAACAATGTGAACAAATTCAAAGTGGGCGATCAAGTAGGGGTAGGTGTCATAGTTGGATCTTGCAAAAGTTGCCAAAACTGCGAACAAAACTTAGAGAATTACTGCCCCAAGTTGATATATACTTACAATGGACATTCATATGATGGAGCAAAGACTTATGGTGGTTATTCTGATAGCATTGTCGTCGATCAGCATTTCGTGCTCCGATTTCCCGACAACTTACCCCTTGATGCCGGAGCTCCTCTTCTGTGCGCTGGAATCACAATCTATAGCCCTATGAAATACTATGGAATGACTGAATCTGGTAAGCATTTGGGTGTGGTTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGTTTGGTAAGGCATTTGGGTTGAAAGTTACTGTCATTAGTACGTCTCCGAGAAAGAAGGAGGAAGCTATCGACAGGCTCGGTGCCGATGCTTTCGTTGTTTCGAGTGATCCTGCACAATTGAAGGCTGCGATGGGGACGATGGATTACATTATTGACACGGTATCAGCTATCCATGCTCTTGCTCCATTGCTTGGTCTGCTAAAGCTGAATGGAAAGTTGGTGACTGTGGGGTTACCTAACAAGCCACTAGAACTGCCAGTTGCTGCTATAGTGCTCGGTAGGAAGATGGTTGGTGGAAGCAACTTTGGAGGGCTGAAAGAGACACAGGAGATGTTGGATTTCTGTGGTAAACATAACATCACAGCAGAGATTGAGCTGATTCGTATGGACGATATTAACACTGCCATCGAACGCCTAGAGAAATCCGATGTTCGATATCGGTTCGTGATTGACATTGGAAACTCCTTCAAATAG 3906 42.4 MRLFSSSTFSLSSLCSSSPPRTLLLHFSQFSASFSSSNYSFPSSSSSRRHDEESRYVRVSVWWDFENCNIPAGVNVFKVAHLITAAVRANGIKGPVQITAFGDILQLSRTNQEALSSTGISLTHIPQGGKNSADRSLLVDLMCWVSQNPPPAHLFLISGDRDFASILHRLRMNNYNVLLASPESAPGVLCSAASIMWHWNALVKGENLVGRHFNQPPDGPYGSWYGHYKVPLEDPFPVNEQVSSIRSEEVSEISSDPKPLPIPRAVIREIRYILKLYPKGISITDLRSELGKSKISIDRDYYGYKKFSRFLLSMPHTLKLQTNGDGQLIVRIVTPRTIEPFESSRGTSDNGTEEQDRNLIAKLNNNGSSPESTSVPLVRSSELNAQDRPEKVQPSYELVKSTGEAMGGEPSTWPVSEPHVMEDSKQTSKFEADNNMIPSIGQHSEAKTGFFRRIWRRFVVGSKDHNSENGSHHISEKCSTSDDASKQKSCGHVTNYSNQNLGEAKSEGKTVKPMSQDANSVHPVSNSADREPAKLQKTAVVASAYDDKSRSRPGVLSSIRNWFKIRENDTETGKESEQCCEQNQLKNECGKHQLFSSSSFWQDMQSFIETPKGVELILQSKTRSEMAQKLLEEGPLVLKSLSTSELFDFIESLISDKKWLVECPSETNPFKVTLSTAEKSSCTKPLHRANGLTSIFMNRVSQPSLQGSSEHDSDSDKKNENVPQAGISTTMTKSKFPERTRSEILCDCQNLVDEILREHPEGYNMGAFRKLFLEKYGYHLDLQKLGYPKLASLLQIMPGVIIESTFIVPTGKVPKVSHVVANSDNESSDLPRKDDDFESTWEELGPAFTDCRSRNEDESTSSSETAEATEKRPKVCYEPVVLEDESSTESDGESCPTTQRSEEQAKPQTNKEESPLLQILDSWYGNKEDNSRKNKSENSDEMNDCFENSLKVSSLTAKNEANTGSFARKHRHQKSYSFVLDTDENDKEKLIDGILDLHLLKNDWGVTDYPIVPGHEIVGVVTSVGNNVNKFKVGDQVGVGVIVGSCKSCQNCEQNLENYCPKLIYTYNGHSYDGAKTYGGYSDSIVVDQHFVLRFPDNLPLDAGAPLLCAGITIYSPMKYYGMTESGKHLGVVGLGGLGHVAVKFGKAFGLKVTVISTSPRKKEEAIDRLGADAFVVSSDPAQLKAAMGTMDYIIDTVSAIHALAPLLGLLKLNGKLVTVGLPNKPLELPVAAIVLGRKMVGGSNFGGLKETQEMLDFCGKHNITAEIELIRMDDINTAIERLEKSDVRYRFVIDIGNSFK 1301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3594612 3601842 + CmoCh02G005930.1 Cmo02g00593 376190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00593 1301 MobiDBLite consensus disorder prediction 891 916 - -
Cmo02g00593 1301 CDD LOTUS 745 802 - -
Cmo02g00593 1301 Gene3D - 996 1296 - -
Cmo02g00593 1301 MobiDBLite consensus disorder prediction 362 381 - -
Cmo02g00593 1301 Gene3D - 740 806 IPR041966 -
Cmo02g00593 1301 ProSiteProfiles OST-type HTH domain profile. 262 334 IPR025605 -
Cmo02g00593 1301 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1099 1264 IPR036291 -
Cmo02g00593 1301 MobiDBLite consensus disorder prediction 362 395 - -
Cmo02g00593 1301 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 1014 1028 IPR002328 GO:0008270|GO:0016491
Cmo02g00593 1301 MobiDBLite consensus disorder prediction 844 942 - -
Cmo02g00593 1301 Gene3D - 264 333 IPR041966 -
Cmo02g00593 1301 SUPERFAMILY GroES-like 995 1128 IPR011032 -
Cmo02g00593 1301 MobiDBLite consensus disorder prediction 463 483 - -
Cmo02g00593 1301 MobiDBLite consensus disorder prediction 484 505 - -
Cmo02g00593 1301 MobiDBLite consensus disorder prediction 463 533 - -
Cmo02g00593 1301 MobiDBLite consensus disorder prediction 512 526 - -
Cmo02g00593 1301 PANTHER LIMKAIN B LKAP 18 949 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cmo02g00593 1301 Gene3D - 1110 1266 - -
Cmo02g00593 1301 Gene3D - 50 200 - -
Cmo02g00593 1301 ProSiteProfiles OST-type HTH domain profile. 744 823 IPR025605 -
Cmo02g00593 1301 PANTHER EMB|CAB71880.1 18 949 - -
Cmo02g00593 1301 Pfam OST-HTH/LOTUS domain 266 330 IPR025605 -
Cmo02g00593 1301 Pfam OST-HTH/LOTUS domain 752 803 IPR025605 -
Cmo02g00593 1301 MobiDBLite consensus disorder prediction 926 942 - -
Cmo02g00593 1301 MobiDBLite consensus disorder prediction 703 733 - -
Cmo02g00593 1301 MobiDBLite consensus disorder prediction 849 879 - -
Cmo02g00593 1301 Pfam NYN domain 58 193 IPR021139 GO:0004540
Cmo02g00593 1301 SMART PKS_ER_names_mod 974 1294 IPR020843 GO:0016491
Cmo02g00593 1301 CDD LOTUS 263 331 - -
Cmo02g00593 1301 CDD PIN_limkain_b1_N_like 58 182 - -
Cmo02g00593 1301 Pfam Alcohol dehydrogenase GroES-like domain 996 1093 IPR013154 -
Cmo02g00593 1301 Pfam Zinc-binding dehydrogenase 1137 1258 IPR013149 -
Cmo02g00593 1301 CDD CAD1 996 1295 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00593 Cmo-Chr2:3594612 Cmo20g01090 Cmo-Chr20:10384192 2.45E-171 dispersed
Cmo16g00385 Cmo-Chr16:1776535 Cmo02g00593 Cmo-Chr2:3594612 3.03E-28 dispersed
Cmo03g00890 Cmo-Chr3:6905091 Cmo02g00593 Cmo-Chr2:3594612 2.11E-122 transposed
Cmo15g00893 Cmo-Chr15:4509498 Cmo02g00593 Cmo-Chr2:3594612 5.16E-41 transposed
Cmo02g00593 Cmo-Chr2:3594612 Cmo20g01089 Cmo-Chr20:10375329 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00593 - - cpep:111796232 1842.78