Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00599 ATGGGTTCTAAATCCCAAATCCTATTAAACCCACAAGCTTTGTTTGAAGATGAAGAACATGAACAAGCATCAACTCAACATCAAATGGAATTCTTCTCTTTCCCTTCAAACTTCAACGTTTCTCATCTTCCTTCAATCCCCCAACACCAAACCCTTTCTCCTTCCACTCCCTCTCTTCACCCTAACCTCTCTCAAACCCTAAACTCCTCTCATTTTCCTACTCCACACCTTCTTTCCTTGCAAACCTCCACTCCAAATCCATGGGCATTTGGGAAGAGAAATGAGTATCATTTGGGATTGGGAGTATCAACCATGAAGATGAAAAGGATGAAAGGAAGAAGAAAAGTGAGAGAGCCAAGATTCTCATTCAAGACCATGACGGATGTCGATGTTCTTGATGATGGTTACAAATGGCGCAAGTACGGTCAGAAAGTCGTCAAAAACACACATCATCCTAGAAGCTATTATCGTTGTACACAAGATGATTGTAGGGTTAAGAAACGAGTAGAGAGATTAGATGAAGATCCAAGAATGGTGATAACAACATATGAAGGACGGCACATTCATTCTCCTTCCCATGATACTCAAGACTCCGAACCTCATACCCATCTCAACAATTTCTTTTGGTAA 630 40.95 MGSKSQILLNPQALFEDEEHEQASTQHQMEFFSFPSNFNVSHLPSIPQHQTLSPSTPSLHPNLSQTLNSSHFPTPHLLSLQTSTPNPWAFGKRNEYHLGLGVSTMKMKRMKGRRKVREPRFSFKTMTDVDVLDDGYKWRKYGQKVVKNTHHPRSYYRCTQDDCRVKKRVERLDEDPRMVITTYEGRHIHSPSHDTQDSEPHTHLNNFFW 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3670966 3672891 - CmoCh02G005990.1 Cmo02g00599 376196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00599 209 Pfam WRKY DNA -binding domain 133 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo02g00599 209 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 23 202 - -
Cmo02g00599 209 MobiDBLite consensus disorder prediction 43 64 - -
Cmo02g00599 209 ProSiteProfiles WRKY domain profile. 127 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo02g00599 209 Gene3D WRKY domain 119 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo02g00599 209 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 23 202 IPR044810 GO:0003700
Cmo02g00599 209 SUPERFAMILY WRKY DNA-binding domain 124 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo02g00599 209 SMART WRKY_cls 132 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00599 Cmo-Chr2:3670966 Cmo14g02238 Cmo-Chr14:15875010 1.15E-46 dispersed
Cmo02g00599 Cmo-Chr2:3670966 Cmo20g01135 Cmo-Chr20:11017198 3.86E-90 wgd
Cmo02g00599 Cmo-Chr2:3670966 Cmo03g01049 Cmo-Chr3:7826027 3.28E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9232 PF03106 WRKY 1.80E-24 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00599 - - cmo:103497483 278.1