Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00614 | ATGTCATCGTCGAACTCCCCCTGCGCAGCCTGCAAATTCCTCCGCCGAAAATGCACGCAAGAGTGCGTATTCGCCCCCTATTTCCCACCCGATCAGCCCCAGAAATTCGCCAATGTGCACAAGGTATTCGGTGCAAGCAACGTGACAAAGCTATTGAACGAATTGAACGCCACACAGCGCGAGGACGCAGTGAACTCATTAGCCTACGAGGCAGAGTTTCGTTTGCGTGACCCTGTGTACGGATGTGTCGGCCTTATTTCAGTCCTACAACACAAGCTGAAACAAATGCAAACAGATCTCTATAACGCCAAAAAGGAGCTCTCTACTTACATTGGCTCTCAAGCTATGCTCCCAATTCTTCAGCCGCCCATTGCCGGAAACCACCCTTCCTCCTCCTCCTCCTCCGCCTCCGCCGCCGCTCTCCTTCCGTACAACATGTTCCCCATGCTTGGAATCCCCAATTCCGCGCCCGCTCCCTCATCATCCCACCAGATGCTCATTCGTGACACGCCTCAACAGCCCCAGACCCAGACCCAGACCCAGAATCAGAATCAGTTGTTTGAGGCGCAGCAATTGGCGGCGGCGGTGGCTGCTAGAGAACAGCAGGAGATGTTTAGGGCTTATGAGCAGAAACAAAACCAAACACAAACCCAACATCATTCGCAACGCCAACAGGAGCTGATGAGGTTCGATGGGTTCGACCCGGCTGGGAACCAAATCAATTCCTCTGGGTCTAATTTAACATTGGGGACGTTTGTTGATAATAGCTACCAAATTGAAGCGCAACCGCTTCAGGTGCAGCTGTTTCTTCAGCCCCAACAGACATTGGTTGAGCAACACCCACAAACACAACACAAGCCTGAACCCACCGCGGAGGATGGTAGGAACATGAACATGGGCCCATCGTGCTAA | 912 | 52.63 | MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELSTYIGSQAMLPILQPPIAGNHPSSSSSSASAAALLPYNMFPMLGIPNSAPAPSSSHQMLIRDTPQQPQTQTQTQNQNQLFEAQQLAAAVAAREQQEMFRAYEQKQNQTQTQHHSQRQQELMRFDGFDPAGNQINSSGSNLTLGTFVDNSYQIEAQPLQVQLFLQPQQTLVEQHPQTQHKPEPTAEDGRNMNMGPSC | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3809187 | 3810098 | + | CmoCh02G006140.1 | Cmo02g00614 | 376211 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00614 | 303 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 279 | - | - | |
Cmo02g00614 | 303 | MobiDBLite | consensus disorder prediction | 153 | 183 | - | - | |
Cmo02g00614 | 303 | MobiDBLite | consensus disorder prediction | 277 | 303 | - | - | |
Cmo02g00614 | 303 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - | |
Cmo02g00614 | 303 | Coils | Coil | 86 | 106 | - | - | |
Cmo02g00614 | 303 | MobiDBLite | consensus disorder prediction | 155 | 183 | - | - | |
Cmo02g00614 | 303 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
Cmo02g00614 | 303 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 36-LIKE | 1 | 279 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00614 | Cmo-Chr2:3809187 | Cmo10g00109 | Cmo-Chr10:468151 | 7.86E-53 | dispersed | |
Cmo02g00195 | Cmo-Chr2:918070 | Cmo02g00614 | Cmo-Chr2:3809187 | 1.93E-21 | transposed | |
Cmo05g00781 | Cmo-Chr5:4480338 | Cmo02g00614 | Cmo-Chr2:3809187 | 3.85E-61 | transposed | |
Cmo02g00614 | Cmo-Chr2:3809187 | Cmo20g01156 | Cmo-Chr20:11332397 | 8.80E-127 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9233 | PF03195 | LOB | 1.40E-41 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00614 | - | - | cmos:111434896 | 367.081 |