Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00614 ATGTCATCGTCGAACTCCCCCTGCGCAGCCTGCAAATTCCTCCGCCGAAAATGCACGCAAGAGTGCGTATTCGCCCCCTATTTCCCACCCGATCAGCCCCAGAAATTCGCCAATGTGCACAAGGTATTCGGTGCAAGCAACGTGACAAAGCTATTGAACGAATTGAACGCCACACAGCGCGAGGACGCAGTGAACTCATTAGCCTACGAGGCAGAGTTTCGTTTGCGTGACCCTGTGTACGGATGTGTCGGCCTTATTTCAGTCCTACAACACAAGCTGAAACAAATGCAAACAGATCTCTATAACGCCAAAAAGGAGCTCTCTACTTACATTGGCTCTCAAGCTATGCTCCCAATTCTTCAGCCGCCCATTGCCGGAAACCACCCTTCCTCCTCCTCCTCCTCCGCCTCCGCCGCCGCTCTCCTTCCGTACAACATGTTCCCCATGCTTGGAATCCCCAATTCCGCGCCCGCTCCCTCATCATCCCACCAGATGCTCATTCGTGACACGCCTCAACAGCCCCAGACCCAGACCCAGACCCAGAATCAGAATCAGTTGTTTGAGGCGCAGCAATTGGCGGCGGCGGTGGCTGCTAGAGAACAGCAGGAGATGTTTAGGGCTTATGAGCAGAAACAAAACCAAACACAAACCCAACATCATTCGCAACGCCAACAGGAGCTGATGAGGTTCGATGGGTTCGACCCGGCTGGGAACCAAATCAATTCCTCTGGGTCTAATTTAACATTGGGGACGTTTGTTGATAATAGCTACCAAATTGAAGCGCAACCGCTTCAGGTGCAGCTGTTTCTTCAGCCCCAACAGACATTGGTTGAGCAACACCCACAAACACAACACAAGCCTGAACCCACCGCGGAGGATGGTAGGAACATGAACATGGGCCCATCGTGCTAA 912 52.63 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELSTYIGSQAMLPILQPPIAGNHPSSSSSSASAAALLPYNMFPMLGIPNSAPAPSSSHQMLIRDTPQQPQTQTQTQNQNQLFEAQQLAAAVAAREQQEMFRAYEQKQNQTQTQHHSQRQQELMRFDGFDPAGNQINSSGSNLTLGTFVDNSYQIEAQPLQVQLFLQPQQTLVEQHPQTQHKPEPTAEDGRNMNMGPSC 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3809187 3810098 + CmoCh02G006140.1 Cmo02g00614 376211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00614 303 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 279 - -
Cmo02g00614 303 MobiDBLite consensus disorder prediction 153 183 - -
Cmo02g00614 303 MobiDBLite consensus disorder prediction 277 303 - -
Cmo02g00614 303 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Cmo02g00614 303 Coils Coil 86 106 - -
Cmo02g00614 303 MobiDBLite consensus disorder prediction 155 183 - -
Cmo02g00614 303 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cmo02g00614 303 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 279 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00614 Cmo-Chr2:3809187 Cmo10g00109 Cmo-Chr10:468151 7.86E-53 dispersed
Cmo02g00195 Cmo-Chr2:918070 Cmo02g00614 Cmo-Chr2:3809187 1.93E-21 transposed
Cmo05g00781 Cmo-Chr5:4480338 Cmo02g00614 Cmo-Chr2:3809187 3.85E-61 transposed
Cmo02g00614 Cmo-Chr2:3809187 Cmo20g01156 Cmo-Chr20:11332397 8.80E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9233 PF03195 LOB 1.40E-41 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00614 - - cmos:111434896 367.081