Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00615 ATGGTTTCCGACTCGGAGCTCATCAGCCGGCTCCGGGAGTTGCTTCGGAATTCCGACCTCAATACCACTACCACTGCTATCGTCCGCCGGAAGCTCGAGGAGGATTTTTCCATTGATTTGTCCGATAAGAAGCAGTTTATTAGGGAACAGGTCGACTTGTTCCTCCACACTGAGCACCAGAGAGTCGATGAAGAAGATGGCGGCGACTGCGAAGTCGACCAGGAGGATGGAGATGATAATTCGAAGATGGAAGAGGAGGATGGAGATAGTGGAGACGGAGATAACTACAACGACGACGACAGAAAGAGTAAAACGGGTTCTAACGAGCTTGGTAAAGAGGTGAAGAAAAGAGGGGGTGGTTTTAGCAAGCTATGTAGCCTCTCCCCACAACTACAGGAATTTATAGGAGTTCCTGAAATGGCAAGGACTGAGGTACATCTTGAGAGTAATTTTTCACCTTTTTTTCTCAATCTTCTCAATATACCATTGACGATCATGTCATTTCCTTCTAATACAGTTGTGAAGCAACTATGGAACCACATTAGAGAGAAGAATTTGCAAGACCCCAGTAATAGGAGAAATATTCTCTGTGATGAACCATTTAAAGCACTCTTTGGTGTTAATTCCATCGACATGTTTCAAATGAATAAAGCTCTATCAAAGCATATTTGGCCGTTGGAATCAAATGACGTTACTCCAGCCAAATCGAGTCAGAAGGAAAAGCAGCAAAAGGAGAAGCCACAAAAGAAGAAGCGGCGGAAGCAAGGAAAAGAAGAAGATTCTGATGACTCTGAGAGAGAGGTGAAGCGGCAAAAGAAAGGAAAATCTGGTTTCCTTGCTCCTCTTCAACTTTCAGATGCTCTGGTGACATTTCTTGGTACAGGAGAGAATGCATTGTCTCGCTCTGAAGTAGTGAAAAGAATGTGGGATTACATGAAGCAAAACAATCTTCAGGCCTTCAAATCATATGCCTCTATACATCTATCATCCATGGCTGGTGCTTTCACTTCGGATCCTTCTGACAAAAGGAGAATAATCTGTGATGAGAAGCTTAAAGAACTGTTTGATGTCGATTCGTTTAACGGCTTCACTGTGTCGAAACTGTTGGCCACTCATTTTGTAAAAAAGACGAAATAG 1137 43.27 MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKQFIREQVDLFLHTEHQRVDEEDGGDCEVDQEDGDDNSKMEEEDGDSGDGDNYNDDDRKSKTGSNELGKEVKKRGGGFSKLCSLSPQLQEFIGVPEMARTEVHLESNFSPFFLNLLNIPLTIMSFPSNTVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGVNSIDMFQMNKALSKHIWPLESNDVTPAKSSQKEKQQKEKPQKKKRRKQGKEEDSDDSEREVKRQKKGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQAFKSYASIHLSSMAGAFTSDPSDKRRIICDEKLKELFDVDSFNGFTVSKLLATHFVKKTK 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3814547 3821137 - CmoCh02G006150.1 Cmo02g00615 376212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00615 378 SUPERFAMILY SWIB/MDM2 domain 274 375 IPR036885 -
Cmo02g00615 378 MobiDBLite consensus disorder prediction 58 117 - -
Cmo02g00615 378 Gene3D SWIB/MDM2 domain 115 232 IPR036885 -
Cmo02g00615 378 MobiDBLite consensus disorder prediction 252 274 - -
Cmo02g00615 378 Pfam SWIB/MDM2 domain 338 373 IPR003121 -
Cmo02g00615 378 Pfam SWIB/MDM2 domain 281 321 IPR003121 -
Cmo02g00615 378 Pfam SWIB/MDM2 domain 169 223 IPR003121 -
Cmo02g00615 378 SMART swib_2 121 228 IPR019835 -
Cmo02g00615 378 SMART swib_2 278 378 IPR019835 -
Cmo02g00615 378 Gene3D SWIB/MDM2 domain 271 378 IPR036885 -
Cmo02g00615 378 Gene3D - 1 59 - -
Cmo02g00615 378 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 172 376 - -
Cmo02g00615 378 CDD SWIB-MDM2_like 282 373 - -
Cmo02g00615 378 ProSiteProfiles SWIB/MDM2 domain profile. 144 225 IPR003121 -
Cmo02g00615 378 SUPERFAMILY DEK C-terminal domain 3 56 - -
Cmo02g00615 378 CDD SWIB-MDM2_like 125 223 - -
Cmo02g00615 378 SUPERFAMILY SWIB/MDM2 domain 166 228 IPR036885 -
Cmo02g00615 378 MobiDBLite consensus disorder prediction 95 117 - -
Cmo02g00615 378 Pfam DEK C terminal domain 2 55 IPR014876 -
Cmo02g00615 378 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 145 - -
Cmo02g00615 378 PANTHER SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN 172 376 - -
Cmo02g00615 378 MobiDBLite consensus disorder prediction 230 274 - -
Cmo02g00615 378 ProSiteProfiles SWIB/MDM2 domain profile. 277 375 IPR003121 -
Cmo02g00615 378 PANTHER SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN 1 145 - -
Cmo02g00615 378 MobiDBLite consensus disorder prediction 67 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00615 K15223 UAF30, SPP27; upstream activation factor subunit UAF30 - csv:101208340 461.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00615 Cmo-Chr2:3814547 Cmo08g00957 Cmo-Chr8:6214237 5.82E-12 dispersed
Cmo01g01150 Cmo-Chr1:9418943 Cmo02g00615 Cmo-Chr2:3814547 1.59E-38 transposed
Cmo02g00615 Cmo-Chr2:3814547 Cmo20g01157 Cmo-Chr20:11349062 4.06E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g469 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00615 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004027 1 3 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 4 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9234 PF02201 SWIB 2.00E-20 No_clan Cmo TR