Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00617 ATGCTTGAAATTTCCACTTCACCGGAAAACTCCGCCGCCGCCGCCGCCGCCGTTGAGGAGGATGGTGCGGCTTCCTCCGCCGGATTTAAGGAGGAGTCTGACCGGAGTTGGGCTGGAAACCGATGGCCGCGAGAGGAGACCATCGCTTTGCTTAAGGTGAGGTCGAGTATGGATACTGCGTTTAGAGATGCCAGCCTTAAAGCTCCTCTATGGGAAGAAGTTTCCAGGTTAGTTCGATTGGATGATTTTCTGTTCGTTTACTGTGGGAATTTTGTAGAATTGTGGTTTTTCAGTGTTCTTGAACTGGAATTGTTGATTGATTTTCCTGGAAAATTGAAATTGGCTGAGCTTGGATATGAACGAAATGCAAAAAAATGCAAAGAGAAGTTTGAGAACATTTATAAGTATCACAAAAGGACTAGAGTTATCAGATCAGGGAAACCGAATGGGAAAAACTATAGGTATTTTGAGCAATTAGAAGCTCTAGACAATCATCCATTGCTACCTTCCCAAGCAGATTCAATGGAAGAAATCCCAAACAATATCGTTCATAATCCAATTCCATGTTCCATAGTAAACCCAGGTTCAAATTTTGTTGAAACTACCACCACATCGATATCAACTTCGACGACGTCTTGCTCGAGCAAAGAGTCGGGTGGGGTGAGGAAGAAGAAGAGGAAGTTTGTGGAGTTCTTTGAAAGGTTAATGAATGAGGTGATTGAGAAGCAGGAGAAATTGCAAAGGAAGTTCATGGAGGCTTTGGAGAAATGTGAAGAAGAGAGGCTAGCTAGAGAAGAAGAATGGAGAGTGCAAGAATTAGCTCGAATCAAGAAAGAGCGTGAGCGTTTGAATCAAGAGAGATCAATTGCAGCTGCCAAAGATGCAGCTCTTCTTTCATTCTTGAAGATGTTCTCTGAACAGATGGGCACAGTGCCATTCCCTGAGAGCTTGATTTTGATGGAGAATTTAACAGAGAAGCAAGATGATGGTAATGTTGAGAGAAATACCAGCAATCAAGAGAATACTAATAATAGCAACAATGGGAATTCGAATCAGATTAGCTCGTCGTCCCGGTGGCCGAAAGAAGAGATCGATGCTCTGATTCAGCTTAGGACTAATCTGGAAATGAAGTATCAAGAGAATGGGCCAAAAGGTCCTCTGTGGGAGGAAATGTCACAAGCCATGAAGAAACTTGGGTATGATAGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATCAATAAATACTTCAAGAGAGTAAAGGAACGTAACAAAAAACGACCCGAGGATTCAAAGACATGCCCTTATTTCCAGCAGCTCGACGCATTGTACAAACTGAAATCCAAGAAAGTCGTCGTCGTCGAGAACCCAACTAAACCAAATTACGAACTGAAACCCGAGGAACTATTAATGCACATGATGGAAGGGCAAGAAGAAGAAAGCCACCAACAACCTGAATCAGCAGCAGACAATGGGGAAGCTCAGAATACTGATCAGAACGAAGACGAAGACGAAGACGAAGACGAAGACGAAGACGAAGACGATCAAATTGTAGCCAAAAACAACAGCAATGAAATGGAAGTAGGCATCTAA 1596 42.98 MLEISTSPENSAAAAAAVEEDGAASSAGFKEESDRSWAGNRWPREETIALLKVRSSMDTAFRDASLKAPLWEEVSRLVRLDDFLFVYCGNFVELWFFSVLELELLIDFPGKLKLAELGYERNAKKCKEKFENIYKYHKRTRVIRSGKPNGKNYRYFEQLEALDNHPLLPSQADSMEEIPNNIVHNPIPCSIVNPGSNFVETTTTSISTSTTSCSSKESGGVRKKKRKFVEFFERLMNEVIEKQEKLQRKFMEALEKCEEERLAREEEWRVQELARIKKERERLNQERSIAAAKDAALLSFLKMFSEQMGTVPFPESLILMENLTEKQDDGNVERNTSNQENTNNSNNGNSNQISSSSRWPKEEIDALIQLRTNLEMKYQENGPKGPLWEEMSQAMKKLGYDRSAKRCKEKWENINKYFKRVKERNKKRPEDSKTCPYFQQLDALYKLKSKKVVVVENPTKPNYELKPEELLMHMMEGQEEESHQQPESAADNGEAQNTDQNEDEDEDEDEDEDEDDQIVAKNNSNEMEVGI 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3835565 3837265 - CmoCh02G006170.1 Cmo02g00617 376214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00617 531 MobiDBLite consensus disorder prediction 497 517 - -
Cmo02g00617 531 SMART sant 355 417 IPR001005 -
Cmo02g00617 531 ProSiteProfiles Myb-like domain profile. 351 415 IPR001005 -
Cmo02g00617 531 MobiDBLite consensus disorder prediction 327 359 - -
Cmo02g00617 531 Pfam Myb/SANT-like DNA-binding domain 357 444 IPR044822 -
Cmo02g00617 531 Pfam Myb/SANT-like DNA-binding domain 113 162 IPR044822 -
Cmo02g00617 531 Coils Coil 229 260 - -
Cmo02g00617 531 MobiDBLite consensus disorder prediction 1 38 - -
Cmo02g00617 531 PANTHER - 113 525 - -
Cmo02g00617 531 PANTHER - 1 77 - -
Cmo02g00617 531 MobiDBLite consensus disorder prediction 476 531 - -
Cmo02g00617 531 CDD GT1 358 422 - -
Cmo02g00617 531 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 113 525 - -
Cmo02g00617 531 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 1 77 - -
Cmo02g00617 531 CDD GT1 40 141 - -
Cmo02g00617 531 MobiDBLite consensus disorder prediction 334 359 - -
Cmo02g00617 531 Coils Coil 273 293 - -
Cmo02g00617 531 Gene3D - 42 139 - -
Cmo02g00617 531 Gene3D - 359 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00617 - - - cmo:103499654 691.034
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00617 Cmo20g01084 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00617 Cmo-Chr2:3835565 Cmo09g01085 Cmo-Chr9:5914416 2.76E-119 dispersed
Cmo02g00617 Cmo-Chr2:3835565 Cmo20g01084 Cmo-Chr20:10264768 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1234 Blo04g00970 . . . Bpe15g00395 . . . Cmo02g00617 Cmo20g01084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01036 . Sed01g3751 . . . Cma20g01075 . . Cpe05g01074 . Bhi10g02341 Tan07g0890 Cmetu09g0584 . Hepe08g1260 . . Cla02g00074 Cam02g0075 Cec02g0077 Cco02g0069 Clacu02g0073 Cmu02g0072 Cre02g0412 Lsi10g00706 . . Cme11g00078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008720 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9235 PF13837 Myb_DNA-bind_4 2.00E-22 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00617 Cmo_Chr02 FPKM 14.47016 14.402114 8.244102 9.801643 1.429847 2.286203 1.420771 0.0 0.176176 0.0