Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00618 ATGGCAATCAGAGTTATGGACTTAGTGTCCGGAGCCTCGCTCAATTGTTTTCATTTCAAAAACAATAAAGGCTTTGTGAAATCTAGGGATTTCACTATCAGATGTTCTGTTCCTCTCTCTTCCCATGGCGCTGCCACCATTGGTAGGGGGTGGAATTTGGGAGAGAGGCCATGGAAGGTGTCGGATGCTCGGTTGGTGCTTGAAGATGGTTCAATCTGGAGGGCTAAGTCTTTTGGCGCTTCCGGAACCCAAGTTGGTGAAGTGGTTTTCAATACTTCTTTGACTGGCACTTCAAATTGGAGGTGTAAACAAACGCTTGGTGATTATTTAATTGAGAGAAACATCATGGGAATTTATGATGTTGACACTCGTGCTATTACTCGTCGGTTAAGGGAAGATGGAAGTCTTATTGGTGTTTTAAGCACTGAAAAGTCGAAATCTGATGATGAGCTATTGGAAATGTCTCGGTCATGGAACATTGTTGGTGTTGACTTAATTAGTGGTGTTTCATGCAAATCTCCTTATGAATGGGTGGATAGAACTGATTTGGAATGGGAATTCAAATCTGGTGGACAAGCTTCAGAGACCTTCCATGTTGTGGCCTATGATTTTGGAATCAAGAGTAACATACTTAGGCGCTTGGCATCTTATGGATGCAAAATCACTGTTGTCCCGTCCACATGGGCGGCATCAGAGACCCTTAAGTTAGAGCCAGATGGGGTTCTTTTCAGCAACGGTCCGGGCGATCCATCTGCAGTTCCTTATGCTGTTGAAACAGTCAAGCAACTAGTTGGGAAGGTACCTGTTTTTGGAATTTGTATGGGCCATCAATTGCTTGGCCAGGCCTTGGGTGGTAAGACCTTCAAAATGAAATTTGGTCATCATGGAGGAAATCATCCCGTTCGCAACTTTCGGAACGACCGTGTAGAAATTAGTGCTCAGAATCACAACTACGCAGTGGATCCTGCATCCCTCCCAGAGGGTGTTGAAGTAACCCACGTCAATCTTAATGATGGAAGCTGTGCTGGTCTTGCTTACCCAAAGCTAAAAATTATGTCTCTTCAATACCATCCTGAAGCATCTCCCGGGCCTCACGATTCCGACTCTGGTAAAGAACATTATATTATTTTGGTCCCTGAATAA 1143 44.27 MAIRVMDLVSGASLNCFHFKNNKGFVKSRDFTIRCSVPLSSHGAATIGRGWNLGERPWKVSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGTSNWRCKQTLGDYLIERNIMGIYDVDTRAITRRLREDGSLIGVLSTEKSKSDDELLEMSRSWNIVGVDLISGVSCKSPYEWVDRTDLEWEFKSGGQASETFHVVAYDFGIKSNILRRLASYGCKITVVPSTWAASETLKLEPDGVLFSNGPGDPSAVPYAVETVKQLVGKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNFRNDRVEISAQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAYPKLKIMSLQYHPEASPGPHDSDSGKEHYIILVPE 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3846091 3848691 + CmoCh02G006180.1 Cmo02g00618 376215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00618 380 Gene3D - 160 377 IPR029062 -
Cmo02g00618 380 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 238 252 - -
Cmo02g00618 380 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 268 284 - -
Cmo02g00618 380 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 285 302 - -
Cmo02g00618 380 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 199 213 - -
Cmo02g00618 380 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 310 321 - -
Cmo02g00618 380 SUPERFAMILY Class I glutamine amidotransferase-like 191 367 IPR029062 -
Cmo02g00618 380 PRINTS Glutamine amidotransferase superfamily signature 268 279 - -
Cmo02g00618 380 PRINTS Glutamine amidotransferase superfamily signature 241 250 - -
Cmo02g00618 380 PRINTS Glutamine amidotransferase superfamily signature 353 366 - -
Cmo02g00618 380 PANTHER CARBAMOYL-PHOSPHATE SYNTHASE ARGININE-SPECIFIC SMALL CHAIN 29 96 - -
Cmo02g00618 380 PANTHER CARBAMOYL-PHOSPHATE SYNTHASE ARGININE-SPECIFIC SMALL CHAIN 97 369 - -
Cmo02g00618 380 SMART CPSase_sm_chain_2 61 141 IPR002474 -
Cmo02g00618 380 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 198 380 - -
Cmo02g00618 380 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 29 96 - -
Cmo02g00618 380 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 97 369 - -
Cmo02g00618 380 Gene3D - 98 159 IPR036480 -
Cmo02g00618 380 Gene3D - 60 97 IPR036480 -
Cmo02g00618 380 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 62 155 IPR036480 -
Cmo02g00618 380 TIGRFAM CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 97 369 IPR006274 GO:0004088|GO:0006207|GO:0006541
Cmo02g00618 380 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 98 139 IPR002474 -
Cmo02g00618 380 CDD GATase1_CPSase 199 368 IPR035686 -
Cmo02g00618 380 PRINTS Anthranilate synthase component II signature 268 279 - -
Cmo02g00618 380 PRINTS Anthranilate synthase component II signature 353 366 - -
Cmo02g00618 380 PRINTS Anthranilate synthase component II signature 241 250 - -
Cmo02g00618 380 Pfam Glutamine amidotransferase class-I 202 368 IPR017926 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00618 K01956 carA, CPA1; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] - csv:101222857 686.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00618 Cmo-Chr2:3846091 Cmo04g01381 Cmo-Chr4:7033213 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1238 . . . . . . . . Cmo02g00618 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe05g01073 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005353 1 3 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00618 Cmo_Chr02 FPKM 3.46077 3.626949 3.574047 3.567116 7.749997 7.628922 7.47617 5.749519 5.100926 5.359958