Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00625 ATGGTCAAGCAAAACAATCTCTTCATCACTGTTCCCACTCACTTCCGTTGCCCAATTTCTCTCGACCTCATGAAATCTCCCGTCAGTTTGGCCACCGGCGTCACCTACGACCGCTCCAGCATCCAGCGCTGGCTCGACTCCGGCAACAATACCTGTCCGGCTACTATGCAGCTCCTTCTCTCCAAGGATTTCGTTCCCAATTGCAATCTCAAGCGCCTTATTCAGATTTGGTCCCACACTCTCCACTTCCAATTCCCTCTCCATGATCATCATTTGGGGACGAATGCAACTCCGATTCGAAACCACTCTCACCCATCTTGCTCTGTTTCTGTTTCTCTATCGAACCTACTCTGTTTTGCTCCACCATTGGAGCAGAACGTCGAGTTTCTCCGCACGATTCAAGGCCTTGTACCCGTGCTTCTCGATGTTCTTGGAGGGGAGGGTAGTTGTGGTGATATTGAATGTTTTGAATTGGCGGTTAAGGTTTTGGATTTGGTGAGATGCGAAATTGAGGATCGAGAGGAGTTTATGAACTCGATGCTGAAAAGTAATCGTGATTGTCTGAGATCTCTGGCTCTCGTTCTGCAGCGAGGGAGTACGGAATCGCGAATTGGAACGGCGAGGATTCTAGAGTGCGTCGCCATTAATGCCGAATCGAAGACCCTAATCGCCGAGAACGAAGGGATTCTATGCGAACTGATAGCACTAATCGGAGTAGACAAAGATATGAAGCTAATCGAATCGGTGCTATCGTGCTTAGTCGCAATATCAATGCCGAGACGCGTGAAAATCAGACTGGTTCAGTTAGGGGTAATAAAAGCCCTAACGAGGCTGCTGTTGCAGAGGAACGTCGCCGTGGGAGTAACGGAGAAGGTTATGAGGCTGTTGGCGGCAGCGGCAGCGGTGGTGGAAGGGCGGTCGGAGATGTGCGAAAACGGAGGCGAATGCGTGGGTGGAATGGTGAGGAAAGTGATGAAGGTGTCGAGTGCGGCGACGGAGCAGGCGGTGACGGCGCTGTGGTGCATATGCTATTTGTTCCGTGAGGAGAGGGCTTTGGTGGCGGTGGCGGAGGCGAAAGGGGTGGAGAAGATACTGCTGGTGCTGCAGAGCGAGTGCCCGGCGCCGGTGAGGCAAATGGGGAAAGATCTGCTGAAGATCTTGAAGGTTAATTCCAAGTCCTTCACCCTCTCGTTTTATGATACTAACAGTTCTTACATTATGCCATTTTGA 1230 51.14 MVKQNNLFITVPTHFRCPISLDLMKSPVSLATGVTYDRSSIQRWLDSGNNTCPATMQLLLSKDFVPNCNLKRLIQIWSHTLHFQFPLHDHHLGTNATPIRNHSHPSCSVSVSLSNLLCFAPPLEQNVEFLRTIQGLVPVLLDVLGGEGSCGDIECFELAVKVLDLVRCEIEDREEFMNSMLKSNRDCLRSLALVLQRGSTESRIGTARILECVAINAESKTLIAENEGILCELIALIGVDKDMKLIESVLSCLVAISMPRRVKIRLVQLGVIKALTRLLLQRNVAVGVTEKVMRLLAAAAAVVEGRSEMCENGGECVGGMVRKVMKVSSAATEQAVTALWCICYLFREERALVAVAEAKGVEKILLVLQSECPAPVRQMGKDLLKILKVNSKSFTLSFYDTNSSYIMPF 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3880872 3882101 - CmoCh02G006250.1 Cmo02g00625 376222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00625 409 CDD RING-Ubox_PUB 15 57 IPR045210 -
Cmo02g00625 409 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 5 409 - -
Cmo02g00625 409 SUPERFAMILY ARM repeat 163 387 IPR016024 -
Cmo02g00625 409 SMART Ubox_2 14 77 IPR003613 GO:0004842|GO:0016567
Cmo02g00625 409 Pfam U-box domain 11 78 IPR003613 GO:0004842|GO:0016567
Cmo02g00625 409 Gene3D - 106 393 IPR011989 -
Cmo02g00625 409 PANTHER WDSAM1 PROTEIN 5 409 IPR045185 GO:0061630
Cmo02g00625 409 SUPERFAMILY RING/U-box 7 79 - -
Cmo02g00625 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 84 IPR013083 -
Cmo02g00625 409 ProSiteProfiles U-box domain profile. 10 84 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00625 Cmo07g00812 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00625 Cmo-Chr2:3880872 Cmo07g00812 Cmo-Chr7:3753755 2.45E-134 dispersed
Cmo02g00625 Cmo-Chr2:3880872 Cmo20g00163 Cmo-Chr20:820835 5.65E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00625 - - csv:101221867 525.398