Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00627 ATGACTCCGGCTTTGTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCTCCCAGCGGCTTTTCCGCTGCACTGCTTCGCTGCGGCGAACTCACGCGCCTCACCGCTCTCCCTCGATGTCTCCTCCGCCGAGGAAGCTGAAACTAATGGCGGAGATAATGGTCAAGGCTAAGTATGCGGTTCTCGAACGGGAAGATTACGACGACGTCAGGTGTGAGAAATGTCGCTCCGGCGACCGGGACGATGAGCTGCTGTTGTGTGACAAATGCGATAAGGCATTTCATATGAAATGTGTGAGTCCGATCGTTGTTAGGGTCCCGATTGGATCCTGGCTTTGCCCCAAATGCTGTGGCCAAAAAAGAATAAGAAGTTTTTCTCAGAAGAAGATTATCGATTTTTTCCGAATTCAGAAATGTAAAGACGCAGAATCTCCATATCTATCCGCTCAAGCTATAAAGCATAGGAGACGACTACGGTCATTGGTGTGGCAGAAGAAAAGTAGAAGATTACTATCATTTCTTCCAAGTGAAGATCCTGATCGCAGATTGAAACAGATGGGTTCACTTGCTACAGCTTTAACAACATTGCAAATGGAGTTCAGTGATGATCTGACGTATTTGCCGGGCATGGCTTCAAGATCTGCTAACCAGGCAGAGCTTGAAGATGGTGGAATGCAGGTTCTTTCCAAAGAGGATATTGAGACCTTTGAACTCTGCAGAACCATGAGCAGAAGAGGCGAATGTGCTCCCCTTTTGGTAGTTTTTGATTCCTGTGAAGGTTTTACTGTACAAGCCGATGGTCAAATTAAGGATATGACTTTTATTGCTGAATATACTGGTGATGTCGATTATCTTACGAACCGCGAACACGATGATTGTGATAGTATGATGACCCTTCTTTTAGCCAAACATCCATCTAGAAGTCTTGTCATCTGCCCTGACACACATGGAAACATTGCTCGCTTCATCAATGGAATAAATAATCATACTCCAGAAGGTAAGAAGAAACAGAACTGTAAATGTGTGAGATACAATGTTAAGGGCGAATGCCGTGTGATTTTGGTTGCTATTCGGGATATTGCTAAAGGGGAGAGGCTTTATTATGACTACAATGGATATGAGTATGAATACCCCACTCATCATTTTCTCTGA 1149 45.43 MTPALSSSSSSSAAAASQRLFRCTASLRRTHAPHRSPSMSPPPRKLKLMAEIMVKAKYAVLEREDYDDVRCEKCRSGDRDDELLLCDKCDKAFHMKCVSPIVVRVPIGSWLCPKCCGQKRIRSFSQKKIIDFFRIQKCKDAESPYLSAQAIKHRRRLRSLVWQKKSRRLLSFLPSEDPDRRLKQMGSLATALTTLQMEFSDDLTYLPGMASRSANQAELEDGGMQVLSKEDIETFELCRTMSRRGECAPLLVVFDSCEGFTVQADGQIKDMTFIAEYTGDVDYLTNREHDDCDSMMTLLLAKHPSRSLVICPDTHGNIARFINGINNHTPEGKKKQNCKCVRYNVKGECRVILVAIRDIAKGERLYYDYNGYEYEYPTHHFL 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3892742 3896073 + CmoCh02G006270.1 Cmo02g00627 376224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00627 382 SMART PHD_3 70 116 IPR001965 -
Cmo02g00627 382 CDD SET_ATXR5_6-like 245 382 - -
Cmo02g00627 382 SUPERFAMILY SET domain 242 371 IPR046341 -
Cmo02g00627 382 Gene3D SET domain 154 382 IPR046341 -
Cmo02g00627 382 PANTHER HISTONE ACETYLTRANSFERASE 14 379 - -
Cmo02g00627 382 SMART set_7 248 376 IPR001214 GO:0005515
Cmo02g00627 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 119 IPR013083 -
Cmo02g00627 382 Pfam PHD-finger 70 116 IPR019787 -
Cmo02g00627 382 ProSitePatterns Zinc finger PHD-type signature. 71 115 IPR019786 -
Cmo02g00627 382 ProSiteProfiles SET domain profile. 233 370 IPR001214 GO:0005515
Cmo02g00627 382 ProSiteProfiles Zinc finger PHD-type profile. 68 118 IPR019787 -
Cmo02g00627 382 Pfam SET domain 272 370 IPR001214 GO:0005515
Cmo02g00627 382 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 14 379 - -
Cmo02g00627 382 SUPERFAMILY FYVE/PHD zinc finger 60 121 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00627 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - csv:101221402 640.188
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00627 Cmo20g01075 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00627 Cmo-Chr2:3892742 Cmo15g01080 Cmo-Chr15:7154773 5.20E-151 dispersed
Cmo02g00627 Cmo-Chr2:3892742 Cmo20g01075 Cmo-Chr20:9949118 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1273 Blo04g00967 . . . Bpe15g00400 . . . Cmo02g00627 Cmo20g01075 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01056 . . Bma03g01031 . . . . . Cma20g01067 . . Cpe05g01065 Cpe16g00078 Bhi10g01661 . . . . . . Cla02g00064 Cam02g0065 Cec02g0067 Cco02g0060 Clacu02g0064 Cmu02g0064 Cre02g0403 . . . Cme11g00068
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9236 PF00856 SET 2.70E-07 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00627 Cmo_Chr02 FPKM 1.17386 1.046767 1.249832 1.139031 2.391184 2.50421 2.211593 2.540313 1.966566 2.232441