Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00629 ATGGTTGATAAGATGAGTAATTTGAGTAAAAACATGGGGTTCAATAAGAGTGTTTCGTTTGGTAGAAGGGCTTTAAGTTCTGGTAGCCCCAGGGTGAGTCGTGTGGGATGGATCTCCCGTTGGTATCATGTGTTTATTGGCATTGGATTTCTTGTTTCATCTCTTGTAGTGATTACTGCTGGTTATATTCATGTATTGCCTGCTCTTCCTCTGTCTTCTCATCATAATGAGGTTTCGAAATCGAGTTATTCGAATGGAAGCTGCAATATGTATGAAGGAAACTGGATCTTGGATGATAGCTATCCACTTTACAATGCTACAGAATGCCCTTTTGCTGAGAAGGGATTTGATTGCTTAGGTAATGGTAGGGTGGATCAGAGTTATCTGAAATGGAGGTGGAAACCGATGAATTGTGATGTGCCTAAATTTGATGTGCAAAATGTGCTGGAAATGCTGCGGAGTAAAAGGGTTGTGTTTGTTGGAGATTCCATGAGTAGAACACAATGGGAATCTTTGATATGCTTACTTATGAGTGGGGTTGAGGATAAAAGGAGTGTTTATGAGATGAATGGGAATACGATTACGAAGCGGATTAAATACTTAGGCGTTCGGTTTAGTTCCTTTAACTTCACGGTTGAGTTCTTTCGCTCGGTTTTCCTTGTGCAAGAAGGTCCGATGCCAAAACATTCACCTAAGAGGGTGAAGTCTGCCCTTAAACTTGATGTGCTGGATAGTATTAGCAGCCAGTGGATTGATTCAGATGTTCTTGTATTCAACACCGGACATTGGTGGGTTCCTGGGAAGTTGTTTGAAATTGGTTGCTATTTTCAGGTTGGAAATTCTCTAAAGCTTGGAATGTCAATTCCCACAGCTTTTGAAGTAGCACTTCGCACCTGGGCGTCCTGGATCGAGGAAAACATCGACACAAACAGAACCCATGTTTTCTTTCGTACTTTCGAGCCATCGCATTGGAAGGACCATACCTTCAAATATTGCAGTGTTACAGACGAACCCGTGAATGAAACGAGAGGAAGAGAGAAAAGCATATTTTCTGATACCATATTAGAGGTAGCAAAGAATATGAAAGCTCCCATTAATGTTTTGCGCATAACTTTGATGTCTGCGTTTCGAAGCGATGCACATGTCGGTAAATGGAGCGACAATCCATCAGTCCCAGATTGCAGTCATTGGTGCCTTCCTGGGGTGCCTGATGTGTGGAATCAAATTTTGGTGTCCTACCTGCTTACTGAATATGACAGCGTAGTTCAAAGAACGGTATAA 1281 42.0 MVDKMSNLSKNMGFNKSVSFGRRALSSGSPRVSRVGWISRWYHVFIGIGFLVSSLVVITAGYIHVLPALPLSSHHNEVSKSSYSNGSCNMYEGNWILDDSYPLYNATECPFAEKGFDCLGNGRVDQSYLKWRWKPMNCDVPKFDVQNVLEMLRSKRVVFVGDSMSRTQWESLICLLMSGVEDKRSVYEMNGNTITKRIKYLGVRFSSFNFTVEFFRSVFLVQEGPMPKHSPKRVKSALKLDVLDSISSQWIDSDVLVFNTGHWWVPGKLFEIGCYFQVGNSLKLGMSIPTAFEVALRTWASWIEENIDTNRTHVFFRTFEPSHWKDHTFKYCSVTDEPVNETRGREKSIFSDTILEVAKNMKAPINVLRITLMSAFRSDAHVGKWSDNPSVPDCSHWCLPGVPDVWNQILVSYLLTEYDSVVQRTV 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3911668 3914408 + CmoCh02G006290.1 Cmo02g00629 376226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00629 426 PANTHER PROTEIN TRICHOME BEREFRINGENCE-LIKE 7 33 416 IPR029964 -
Cmo02g00629 426 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 33 416 IPR029962 GO:0016413
Cmo02g00629 426 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 140 412 IPR026057 GO:0016740
Cmo02g00629 426 Pfam PMR5 N terminal Domain 87 139 IPR025846 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00629 - - - cmax:111499744 874.004
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01032 Cmo-Chr1:8078823 Cmo02g00629 Cmo-Chr2:3911668 5.75E-26 dispersed
Cmo02g00629 Cmo-Chr2:3911668 Cmo07g00868 Cmo-Chr7:4095428 1.88E-99 dispersed
Cmo02g00629 Cmo-Chr2:3911668 Cmo06g00103 Cmo-Chr6:593647 1.06E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1281 Blo04g00965 . . . Bpe15g00402 . . . Cmo02g00629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01054 . . Bma03g01030 . . . . . . . . Cpe05g01063 . Bhi10g01666 . . . . . . Cla02g00060 Cam02g0061 Cec02g0063 Cco02g0056 Clacu02g0060 Cmu02g0059 Cre02g0399 Lsi10g00720 . . Cme11g00064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010327 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00629 Cmo_Chr02 FPKM 2.368928 2.691223 3.396815 3.179557 2.663396 2.722966 2.588738 3.432144 3.26064 3.204333