Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00650 ATGATGCTCCTCGGTGACCCTACCGCCGTCTATGGCGGCTCTGTGGTCGTCGTTGGGGTTAAAATGGATTCTCAGAGTCGGGAACTGCTTACTTGGGCGCTCGTTAAAGTTGCGCAGCCTGGAGATTGTGTCATTGCTCTTCATGTTCTTGATTCTGCCGTTGGTATTTTTGCAGAGGGAAATTCGACTTTGCTCTCTCTTGTGAAGTCGTTTGACTCTGTATTGTCCGCCTATGACGGATTTTGCAACCTGAAGCAGGTTGAATTGAAGCTCAAGGTCTGCCGAGGCTCGCCGGTCCGGAAAATTATTAGACGGGAAGTTGATTCTTACGGCGAGGCTTCGCTAATTCTCGGTACTTCTAAAACTCACCATAGAATCCGTTCGTCGGTATCGGTTGCAAAGTACTGTGCTAGAAAATTGTCGAACAGATTCTGCGTTTTAGCCGTCAATAATGGCAAAGTTATTTTCCAGAGATTAGCGACTTTCCCAATTAAAGGCCAGTCTCGAGACAAGGGTGGGGACAAGAATTGTGCAACCATTGTAGAAGAAATTAATGAATCAAAATCTGTTGGGTTGGCTGCAAACTTTATCAACGGTCACCGCTTACACAAATCTGACTCTGGTTGTAATGATAAAACGGAGAGGGACTCTGTTCAGAGTGCTCTGTCTTTGCTTGAACGAAATGATTCCGCAACTGATTTGGTGGACCAGTTACAGGACAATGGTGTTTGGAATTCATTGGCTTTGGTACCATTTCAAAAGCCTCAAGAAATTTCGAAGTCAAATTCCATTGTCAAGCGAGGATCGTTGCAATGGAAATCAAGTTGGTCGCTTCTGCGTCGGATATTTTTAACCAAGCAGCATGTAGAGAAATCATCAAAGAAGTTTCCTATGTTCCAAGGTGTATTACACATACCGAACTTCCAGTCATCGTCAGCCTTGGTTTATCCAGGCCAGAAACAAAGCAGTTCTGATCCAGATCAGAGCTCCACAATTGATGGGGAAAATGGTGCAATTGTGCCATATGTGTCCAGCCATGTTTTGGAAAGCCTTCCTAAAGAGGTATTGGATTTAAAGGATAAATACTCGTCCACTTGCAGATTGTTTACTTATGAGGAACTTTTGTTGGCAACTTCTAATTTTATGCCTGAGAATATGGTTGGTAAAGGAGGGAGTAGCTATGTTTACCGAGGGCGTCTTCCCGATGGCAAGGAAATTGCTGTCAAAATTTTGAAGCCATCTGAGACTGTTCTAAAGGAGTTTGTTCAGGAAGTTGAGATCATTGCAACTTCAACTCATAAGAATATTATATCTTTATTGGGTTTTTGTTTGGAGGACAATAATTTAGTTTTGGTCTATGATTTTCTTTCAAGAGGAAGTATGGAAGAGAATCTTCATGGTTGTAAGAAGGATGTGAATTCATTTGGTTGGCAAGAGAGGTTTAAGGTTGCTGTTGGTGTTGCTGAGGCACTTGACTATCTACACAATTGCAGGGAAGAAGCTGTGATACACAGGGATGTGAAATCCTCTAACATTCTACTTTCGGAGAATTTCGAACCGCAGCTTTCGGATTTTGGCCTTGCTAGTTGGGCATCGTCGTGCTTACAAATCACTTGTACTGATGTAGCTGGAACATTTGGTTATTTGGCTCCTGAGTATTTCATGCACGGAAAAGTGAGCGACAAGATCGATGTCTATGCATTCGGTGTGGTACTCCTTGAGCTACTTTCAGGTAGAAAACCAATCAGCGACAATTGTCCCAAGGGGGAGGAGAGTCTCGTAATGTGGGCAAAGCCAATTCTGATGGAAGGCAAAGTTTCACAATTGCTAGATCCAAGGCTAGGCAGTGACTACAACCACGATCAAATAGGTCGAATGATTTTGGCTGCTACCCTTTGTATTAGACGAGCACCGAGACATCGCCCTCAAATCAGCCTGGTATTGAAACTTCTCCAAGGTGATGAGGAAATAACAACATGGGCAAGACAACAAATCGACGAATCAAACGAATTCAATGCGAGTGACGAAGAACCTCTACCTACTAACATCCAATCACACCTTAACCTAGCGTTGCTTGGTTTGGAAGATGACTCACTTTCTGTTAGCAGTGGAATACAAAGCATTTCCATAGAGGACTACTTGCAAGGTAGATGCAGCCGCTCTTCAAGCTTCAACTAG 2178 43.39 MMLLGDPTAVYGGSVVVVGVKMDSQSRELLTWALVKVAQPGDCVIALHVLDSAVGIFAEGNSTLLSLVKSFDSVLSAYDGFCNLKQVELKLKVCRGSPVRKIIRREVDSYGEASLILGTSKTHHRIRSSVSVAKYCARKLSNRFCVLAVNNGKVIFQRLATFPIKGQSRDKGGDKNCATIVEEINESKSVGLAANFINGHRLHKSDSGCNDKTERDSVQSALSLLERNDSATDLVDQLQDNGVWNSLALVPFQKPQEISKSNSIVKRGSLQWKSSWSLLRRIFLTKQHVEKSSKKFPMFQGVLHIPNFQSSSALVYPGQKQSSSDPDQSSTIDGENGAIVPYVSSHVLESLPKEVLDLKDKYSSTCRLFTYEELLLATSNFMPENMVGKGGSSYVYRGRLPDGKEIAVKILKPSETVLKEFVQEVEIIATSTHKNIISLLGFCLEDNNLVLVYDFLSRGSMEENLHGCKKDVNSFGWQERFKVAVGVAEALDYLHNCREEAVIHRDVKSSNILLSENFEPQLSDFGLASWASSCLQITCTDVAGTFGYLAPEYFMHGKVSDKIDVYAFGVVLLELLSGRKPISDNCPKGEESLVMWAKPILMEGKVSQLLDPRLGSDYNHDQIGRMILAATLCIRRAPRHRPQISLVLKLLQGDEEITTWARQQIDESNEFNASDEEPLPTNIQSHLNLALLGLEDDSLSVSSGIQSISIEDYLQGRCSRSSSFN 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4047118 4050650 - CmoCh02G006500.1 Cmo02g00650 376247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00650 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
Cmo02g00650 725 Pfam Universal stress protein family 16 140 IPR006016 -
Cmo02g00650 725 ProSitePatterns Protein kinases ATP-binding region signature. 387 419 IPR017441 GO:0005524
Cmo02g00650 725 CDD USP_Like 23 149 - -
Cmo02g00650 725 Gene3D Phosphorylase Kinase; domain 1 343 455 - -
Cmo02g00650 725 Coils Coil 221 241 - -
Cmo02g00650 725 ProSiteProfiles Protein kinase domain profile. 381 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00650 725 Gene3D Transferase(Phosphotransferase) domain 1 456 670 - -
Cmo02g00650 725 PANTHER OS01G0253100 PROTEIN 10 719 IPR045271 GO:0004714|GO:0006468
Cmo02g00650 725 Pfam Protein kinase domain 384 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00650 725 SUPERFAMILY Protein kinase-like (PK-like) 362 661 IPR011009 -
Cmo02g00650 725 Gene3D HUPs 14 149 IPR014729 -
Cmo02g00650 725 SMART serkin_6 381 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00650 725 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 10 719 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00650 - - - csv:101216673 1192.56
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00650 Cmo20g01056 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00650 Cmo-Chr2:4047118 Cmo15g00658 Cmo-Chr15:3185027 0 dispersed
Cmo04g02399 Cmo-Chr4:17868918 Cmo02g00650 Cmo-Chr2:4047118 4.82E-75 dispersed
Cmo15g00765 Cmo-Chr15:3756290 Cmo02g00650 Cmo-Chr2:4047118 1.38E-73 dispersed
Cmo02g00650 Cmo-Chr2:4047118 Cmo20g01056 Cmo-Chr20:9746735 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1322 . Blo16g00554 . . . Bpe13g00054 . Bma15g00776 Cmo02g00650 Cmo20g01056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00187 . . Bpe10g00266 Bpe06g00305 . Bma06g00472 . . . . Cma20g01050 . . Cpe05g01044 Cpe16g00096 Bhi10g01716 . . . . . . Cla02g00030 . . . . . . Lsi10g00758 . . Cme11g00032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005017 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 0 1 1 1 0 0 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74101 PF00069 Pkinase 3.50E-42 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00650 Cmo_Chr02 FPKM 44.804012 45.411449 63.230083 62.847343 39.410423 37.865471 42.974075 82.70433 84.036568 96.775841