Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00667 ATGACTATGACGGTCGCCGCAAGAGCAATCGCAACGGCTCGATCAGTGGTGCGAGCGAGCAGGCTCCGTAATGTGTTTACTGCGCTGAAATCTCAGTCTCACGCTCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGTATGCTCTCCGAGGAGCAGAGCATGAGCTCGGAGGTGCAGAGCATCGCCGCTCGTCTTCGTAATTCTGGACTGTTACGAAGCCAAGGCCTCATTGGCGGCCAGTGGATTGATGCTTACGATGGGAGGACCATTAAGATAAACTACGGAGCCAGCTTTCTTGAATTCTTTTCCGAGGAAGCAAAACGAGTATACGGTGACATAATCTCACCAACTATAGCTGATCGTCGACTTTTTGTGTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTATTACCCCTTGGAACTTTCCGTTGGCTATGATTACACGGAAGGTTGCACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCCTCTGAACTTACTCCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCATTGCAAGCTGGAATTCCCCCAGGTGTAGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTACACAGGTTAGAAAAATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAATTGATGGCTGGAGCTGCTGGGACTGTTAAAAAGGTGTCCTTAGAACTTGGGGGTAATGCACCTCACATAGTCTTTGATGATGCAGATGTGGATGTTGCAGTAAAAGGAGTTATTGCATCGAAGTTTCGGAATAGTGGACAGACTTGTGTTTCTGCCAATAGGATCCTTGTTCAAGAAGGCATATACGAGAAATTTTGTAATGCTTTCTCAAAAGCTGCGCAAGATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTTGCTCAGGGTCCTTTGATTAATGAAGCTGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCATCACAAAGCCAGTCTTTTTTGTAGTTGTCAGTTGGGTCGTAGTATTCAAGTCCTTTTTTGATAACCTTCTTCTAAGAATGCCTTTAACAGAGGAGGAAGCAATTGGTCTCGCTAATGACGCCAATGCAGGATTAGCTGCTTGCGTATACACAAATAATATTCAACGTTCATGGAGAATGACTGAAGCTCTTGAATATGGAATGGTTGGTGTTAATGAAAGCCTAATTGCTACAGAGGTGGCTCCATTTGGTGGCATTAAACAGTCAGGCCTTGGTCGGGAAGGATCCAAATATGGGATGGACGATTATCTTGAGAGGAAAAAACAAACCATCAGTCCACTTTTAAGACAGTTTAAGAAGCTTCTCAAAATAGGCCAATGTGTGTCCAAGGAGATTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGTCTCCGCTGGACAGTCGAGCTCCACGAGCGCTTCGTCGACGCTGTCACTCAGCTCGGAGGACCCGACAAAGTTCAGGCTCGGGAAGCAACCGCACAAGGAATTCAACGATCAATCGATAAAGGATGGCATGAGAGCTTCAGCCTTAGAACTTCATAGAAACAGTGGATCTTCTTCCACCTTAATGGACCGTAGCATGAACGAAATGCAATTGGAGGTCCAAAGACGGCTGCATGAACAAATTGAGGTACAAAGACATCTTCAATTGAGGATTGAGGCTCAAGGCAAATACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTCGCCGGCGAAAACATGGCCGCCGCCGCCGCCGCCGCCGCCGCCGGACGTTTCAAAACCACTTCCAACAATATTGGAACAACCACCAATCTTGTTTCAGACGCTGCCAACAAGGCCTTCATTTCACCTCCTCCTCCTCCTCCTCACACCTTCCCTCCTTTTCAAGACATCAACAACCTATTTACCTCGGAACCACCGGCGCCTGCGCCGCCTCTTATCGACTGCCTCAAGAAGCCGAACCCCTTCATCTCCGACACCGGTAAGACTCCCATTTTCTGGGCCGATGATCTCCGTCTCCAGGACTTAGGAACCCCGTCGGCCACCCTAGCGCCACCACCGCCACCCATCAATGGCTCGGCTGACTTGGACCCTCAACAGCTGGAAATGTATGAAACTAAGCCACCGCCACTGCTGCTCTCCGTTGGCAACGATGTGATGGCGAATGAGAAGAAGTTCGACGTGTCGTTAAAGCTCGAGGGACCGTCACCGCGACATTCGTCGGGGCATTCCGATGAGAAGGTGAATAACAATAATAACCCTACAATGTCACAATCACAGGGAAGAAATAACTCTCATTTGGGTTAA 2331 48.61 MTMTVAARAIATARSVVRASRLRNVFTALKSQSHALLIRQMSSEAQSMLSEEQSMSSEVQSIAARLRNSGLLRSQGLIGGQWIDAYDGRTIKINYGASFLEFFSEEAKRVYGDIISPTIADRRLFVLKQPVGVVGVITPWNFPLAMITRKVAPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASTQVRKITFTGSTAVGKKLMAGAAGTVKKVSLELGGNAPHIVFDDADVDVAVKGVIASKFRNSGQTCVSANRILVQEGIYEKFCNAFSKAAQDLQVGDGFGEGVAQGPLINEAAVQKVEKFLQDAITKPVFFVVVSWVVVFKSFFDNLLLRMPLTEEEAIGLANDANAGLAACVYTNNIQRSWRMTEALEYGMVGVNESLIATEVAPFGGIKQSGLGREGSKYGMDDYLERKKQTISPLLRQFKKLLKIGQCVSKEIPVSSSPPTPSPVSAGQSSSTSASSTLSLSSEDPTKFRLGKQPHKEFNDQSIKDGMRASALELHRNSGSSSTLMDRSMNEMQLEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAAAAAAAAGRFKTTSNNIGTTTNLVSDAANKAFISPPPPPPHTFPPFQDINNLFTSEPPAPAPPLIDCLKKPNPFISDTGKTPIFWADDLRLQDLGTPSATLAPPPPPINGSADLDPQQLEMYETKPPPLLLSVGNDVMANEKKFDVSLKLEGPSPRHSSGHSDEKVNNNNNPTMSQSQGRNNSHLG 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4194807 4215618 + CmoCh02G006670.1 Cmo02g00667 376264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00667 776 MobiDBLite consensus disorder prediction 734 776 - -
Cmo02g00667 776 MobiDBLite consensus disorder prediction 463 509 - -
Cmo02g00667 776 Pfam MYB-CC type transfactor, LHEQLE motif 543 582 IPR025756 -
Cmo02g00667 776 MobiDBLite consensus disorder prediction 463 497 - -
Cmo02g00667 776 MobiDBLite consensus disorder prediction 754 776 - -
Cmo02g00667 776 MobiDBLite consensus disorder prediction 685 704 - -
Cmo02g00667 776 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 361 439 - -
Cmo02g00667 776 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 93 334 - -
Cmo02g00667 776 SUPERFAMILY ALDH-like 86 442 IPR016161 GO:0016491
Cmo02g00667 776 Pfam Aldehyde dehydrogenase family 90 334 IPR015590 GO:0016491
Cmo02g00667 776 Pfam Aldehyde dehydrogenase family 361 438 IPR015590 GO:0016491
Cmo02g00667 776 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 242 339 IPR016163 GO:0016620
Cmo02g00667 776 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 238 245 IPR029510 GO:0016491
Cmo02g00667 776 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 340 446 IPR016163 GO:0016620
Cmo02g00667 776 MobiDBLite consensus disorder prediction 734 753 - -
Cmo02g00667 776 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 361 439 - -
Cmo02g00667 776 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 93 334 - -
Cmo02g00667 776 CDD ALDH_F5_SSADH_GabD 93 438 - -
Cmo02g00667 776 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 4 241 IPR016162 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00667 K17761 SSADH; succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] - csv:101217352 529.635
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00667 Cmo-Chr2:4194807 Cmo20g00312 Cmo-Chr20:1530207 2.12E-121 dispersed
Cmo02g00667 Cmo-Chr2:4194807 Cmo20g00311 Cmo-Chr20:1515459 1.96E-21 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g00644 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 71.6 1.5e-213 739.6
Cmo11g00602 . 6 501 Aldehyde Dehydrogenase Gene Family AT3G24503 68.7 1.5e-208 723.0
Cmo12g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 6.4e-159 558.1
Cmo05g00005 . 3 475 Aldehyde Dehydrogenase Gene Family AT3G24503 55.3 2.1e-154 543.1
Cmo11g00105 . 68 552 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 4.7e-154 542.0
Cmo11g00105 . 1 552 Aldehyde Dehydrogenase Gene Family AT3G48000 78.6 4.2e-257 884.4
Cmo12g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 76.8 3.2e-249 858.2
Cmo05g00005 . 8 475 Aldehyde Dehydrogenase Gene Family AT3G48000 79.1 8.7e-231 797.0
Cmo10g00644 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.5 1.1e-161 567.4
Cmo11g00602 . 17 501 Aldehyde Dehydrogenase Gene Family AT3G48000 52.8 3.7e-157 552.4
Cmo12g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.8 1.9e-169 592.8
Cmo11g00105 . 1 396 Aldehyde Dehydrogenase Gene Family AT1G23800 72.2 6.7e-167 584.3
Cmo05g00005 . 3 319 Aldehyde Dehydrogenase Gene Family AT1G23800 81.1 3.5e-155 545.4
Cmo10g00644 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.6 4.8e-104 375.6
Cmo11g00602 . 17 345 Aldehyde Dehydrogenase Gene Family AT1G23800 54.4 5.8e-102 368.6
Cmo01g01433 CST 3 485 Aldehyde Dehydrogenase Gene Family AT4G34240 63.4 1.7e-181 633.3
Cmo09g00776 CST 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 62.6 5.9e-179 624.8
Cmo09g00775 . 66 523 Aldehyde Dehydrogenase Gene Family AT4G34240 64.0 4.1e-172 602.1
Cmo09g00775 . 111 521 Aldehyde Dehydrogenase Gene Family AT1G44170 72.7 3.7e-176 615.1
Cmo01g01433 CST 73 483 Aldehyde Dehydrogenase Gene Family AT1G44170 71.0 8.2e-176 614.0
Cmo09g00776 CST 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 1.2e-174 610.1
Cmo16g00705 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G36250 61.5 2.3e-182 636.0
Cmo02g01283 . 5 497 Aldehyde Dehydrogenase Gene Family AT4G36250 53.8 5.0e-153 538.5
Cmo20g00311 . 39 553 Aldehyde Dehydrogenase Gene Family AT1G79440 75.0 6.8e-228 787.3
Cmo02g00667 . 29 447 Aldehyde Dehydrogenase Gene Family AT1G79440 55.2 4.5e-147 518.8
Cmo11g01452 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 84.3 5.3e-245 844.3
Cmo03g00888 . 211 615 Aldehyde Dehydrogenase Gene Family AT2G14170 69.4 1.9e-170 596.7
Cmo10g00162 . 1 531 Aldehyde Dehydrogenase Gene Family AT1G74920 76.1 2.6e-245 845.1
Cmo10g00162 . 1 533 Aldehyde Dehydrogenase Gene Family AT3G48170 76.7 4.8e-247 850.9
Cmo12g01175 . 72 567 Aldehyde Dehydrogenase Gene Family AT2G24270 90.3 1.9e-267 918.7
Cmo05g01265 . 23 143 Aldehyde Dehydrogenase Gene Family AT2G24270 81.1 2.2e-50 197.6
Cmo13g00961 . 32 590 Aldehyde Dehydrogenase Gene Family AT5G62530 75.2 5.2e-255 877.5
Cmo17g00356 CST 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.0 2.3e-277 951.8
Cmo08g01242 CST 1 588 Aldehyde Dehydrogenase Gene Family AT3G66658 74.3 2.5e-271 931.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00667 Cmo_Chr02 FPKM 0.0 0.0 1.185514 1.104513 131.07753 147.219757 138.832184 0.404906 0.0 0.0