Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00697 ATGCAAGATCCAGCGTCTTCAAACCCTATCCACACTCCCAATTCCAATCAAATTCCTCCCTTCGATGTTGCACCGCCGCCGAAGACTCATAAACCGCCGCCGGTGGTGAACGCGACGGCTTCCTCATCCATGTTTGCCAATGCGAATGCTGGTAATGCCTCGTTTGTGCCTAGAGGTGGTTCACATCATCGGAGGGCTCATTCGGAAGTTAGCTTCCGATTGACGGAGGACATTATGGATCTCTCCGGCTCGGATCCGTTCAACGGCGGTTTGTCAACGGCTAGTCTGGAGGAGATCGGATCGGAGGATGATCTGTTTTCGACCTACATTGATGTGAAGAAGCTTGGAGGTAATGGAGGAGGGAATTTCGTGGATCAAAATGCCAATGGCGGAAGTGAAGGCGCCGGTGGTAGTGAGGGGGAGAAGACTCCGAAGCCAAGGCATCGACATAGCTTATCGGTGGATGGAATGACATCGTCATCGAGTATGTTTGGGGAGGTTATGGAAGCGAAGAAAGCTATGCCTCCTGATAAATTGGCTGAGCTTTGGAGCAGTGACCCCAAACGCGCCAAGAGAATCAAATTTTTGGTATCAACATTCGAACTATTCGGAGAGATATTAACGGTGAAAGATGACAAATTCATCGTCCTGTCCTGTAATCGGCATCATCTCGATATGCACAATGATTTCAGTTTCAGATTAAGGTTTTGGATTTCCTGGGAACCTCTTTCTCATGTTCTTGCTGATATGTGTAGGATATTAGCAAATCGACAGTCTGCTGCTCGCTCAAAAGAGAGGAAGGCACGGTATATACAAGAGTTGGAGCGCAAGGTGCAGACCCTTCAAACAGAAGCAACTACTCTATCAGCCCAATTGACTTTGTTCCAGCGAGATACAAGGGGTCTCAGTAACGAGAATACAGAGCTTAAGCTTAGGTTACAGGCTATGGAGCAACAAGCTCAATTGCGTGATGCTCTAAACGACGCATTAAAGAAGGAAGTCGATAGGCTTAAATTCGCTACCGGGGAAATGATGAGCCCTTCCGAGTCTTTTAACTTGGGAATGCATCACATGGCATATGCCCCATCGTCTTTCGTTCAACGTTCACAGCAACCAGCAGGTCCTCAGAGTATGCAAATGCCACCATATAGCCATTCCCCATCTAACATGTCTAGCCACCCTATGCATCCATCAGATTCTCATTCTCTCTCGGAGGTTCTGCAGAGCGACCCTCTCAGCCGATTACAGGGTCTAGACATCAGTAGTAAAGGATCGTCACTTGTGAAATCTGAGGTCTCCTCAATCTCTGCAAGGGGATTCTTCAAATGGGTTTCGTTGAAATGTTTGTTTTGGCATATGAAGCCTTGTTGTTATGTTCATGAGGTGCCTGAAACCTTTGTTGGAATGAAACATGTTGTGTTCATGTCGGGCAACCATATGTGTGGACAACTACTAATGAAGATGAATACAGATGCAGCAATGAATAGAAATCAGGACCAGAGCACAATTTCAGCAGTGTTCATAAATGAAAAAGGAGAAAATATGTTTACCTTCACCAAATTTGTTGAGCAGAAGTGTGGCAAACCTGTTGAAACACAAATCAAAATAGGGTTCAGAAGCAGGGATGATCATGTGGGAAGTGGTACAGAAATCTTACATGCTAAAACGGTGCTCGTTCAACCATTGCTACTGGAACAAACATCAGCTTGCTGA 1713 46.0 MQDPASSNPIHTPNSNQIPPFDVAPPPKTHKPPPVVNATASSSMFANANAGNASFVPRGGSHHRRAHSEVSFRLTEDIMDLSGSDPFNGGLSTASLEEIGSEDDLFSTYIDVKKLGGNGGGNFVDQNANGGSEGAGGSEGEKTPKPRHRHSLSVDGMTSSSSMFGEVMEAKKAMPPDKLAELWSSDPKRAKRIKFLVSTFELFGEILTVKDDKFIVLSCNRHHLDMHNDFSFRLRFWISWEPLSHVLADMCRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQRDTRGLSNENTELKLRLQAMEQQAQLRDALNDALKKEVDRLKFATGEMMSPSESFNLGMHHMAYAPSSFVQRSQQPAGPQSMQMPPYSHSPSNMSSHPMHPSDSHSLSEVLQSDPLSRLQGLDISSKGSSLVKSEVSSISARGFFKWVSLKCLFWHMKPCCYVHEVPETFVGMKHVVFMSGNHMCGQLLMKMNTDAAMNRNQDQSTISAVFINEKGENMFTFTKFVEQKCGKPVETQIKIGFRSRDDHVGSGTEILHAKTVLVQPLLLEQTSAC 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4402783 4405610 + CmoCh02G006970.1 Cmo02g00697 376294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00697 570 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 252 439 - -
Cmo02g00697 570 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 252 309 IPR004827 GO:0003700|GO:0006355
Cmo02g00697 570 PANTHER ATBZIP TRANSCRIPTION FACTOR 252 439 - -
Cmo02g00697 570 Coils Coil 299 319 - -
Cmo02g00697 570 CDD bZIP_plant_RF2 252 298 IPR044759 GO:0003700|GO:0006355
Cmo02g00697 570 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 4 193 - -
Cmo02g00697 570 MobiDBLite consensus disorder prediction 1 18 - -
Cmo02g00697 570 MobiDBLite consensus disorder prediction 1 41 - -
Cmo02g00697 570 MobiDBLite consensus disorder prediction 19 33 - -
Cmo02g00697 570 MobiDBLite consensus disorder prediction 365 406 - -
Cmo02g00697 570 Pfam bZIP transcription factor 252 296 IPR004827 GO:0003700|GO:0006355
Cmo02g00697 570 SUPERFAMILY Leucine zipper domain 252 299 IPR046347 GO:0003700|GO:0006355
Cmo02g00697 570 MobiDBLite consensus disorder prediction 121 159 - -
Cmo02g00697 570 Coils Coil 264 291 - -
Cmo02g00697 570 PANTHER ATBZIP TRANSCRIPTION FACTOR 4 193 - -
Cmo02g00697 570 Gene3D - 250 300 - -
Cmo02g00697 570 SMART brlzneu 247 308 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00761 Cmo02g00697 CCT
Cmo02g00697 Cmo20g00333 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00697 Cmo-Chr2:4402783 Cmo04g00103 Cmo-Chr4:550396 1.03E-78 dispersed
Cmo01g00761 Cmo-Chr1:3928092 Cmo02g00697 Cmo-Chr2:4402783 8.41E-112 wgd
Cmo02g00697 Cmo-Chr2:4402783 Cmo20g00333 Cmo-Chr20:1631748 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9242 PF00170 bZIP_1 1.50E-06 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00697 - - csv:101205663 430.639