Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00700 ATGTTCAAGAATTCCAAATCGGAATATGGGTATGTTGAGACCGATCCGACTAGTCGTTACGGCCGTTTTGAAGAAGTGTTGGGAAAAGGGGCCATGAAGACAGTGTATAAAGCCATTGATGAGTTTCTAGGAATAGAGGTGGCGTGGAGTCGGGTGAAACTCAACGAGGTTCTCCGATCACCGGAGGATTTGCAGCGGTTGTATTCCGAGGTTCACTTACTTAGCACGCTTAAGCATGAATCCATCATGCAGTTCTACACTTCATGGATTGATGTTGATCACAAAACCTTCAACTTTATTACCGAACTCTTTACTTCTGGAACGCTTAGAGAATATGGGAAGAGATATAGCCAAGTTGATATTAGAGCTATTAAGAGCTGGGCGCGCCAGATCCTGTTGGGGCTCGTTTATTTGCACGAGCACGATCCGCCGATAATACACCGAGATTTGAAGTGTGACAATATCTTTGTCAATGGCCATCTTGGGCAAGTCAAGATTGGTGACTTGGGGCTTGCTGCTATACTCCATGGTTCCAAATCTGCTCATAGTGTTATAGGCACGCCAGAGTTTATGGCACCTGAATTATACGAGGAGGATTACAATGAGCTCGTAGATGTCTACTCATTTGGCATGTGTGTTCTAGAGATGCTCACTGCTGAGTATCCATATAGCGAGTGTTCTAATCCCGCACAGATCTACAAGAAAGTCACGTCGGGGAAGCTGCCAGCAGCATTGTACAAGATTCAAGACGTCGAGGCGCAGAGATTCATCAAGAAATGCTTGGTACCGGTATCGATGAGGGCGTCTGCTAAGGAGCTGTTGGCTGATCCTTTTCTCATGGTTGATGGAGATAGACCTTCATCAAAAGAGAGGAAGCAAACCCAGAAGCCATTTTTGAATGCTAAAGAGATGGAGAAATTGCACTTGGGTGACGGTTTAAGCAGGACGAAGATGACGATCACGGGGAAGCTGAACCACGAAGACGATACCCTCTTTCTCAGAGTTCAAACTGCAGATAAAGATGGCTCGCTTAGGAACATATATTTCCCATTCGACATAGTGAACGACACGGCATTGGACGTGGCGATCGAGATGGTGAAAGAGTTAGAGATCTCTGATTGGGAGCCTTTTGAAATAGCAGACATGATAGAAGGAGAGATATCAGCTCTGGTTCCAAACTGGAATAGAAGTGAGTTGTCCAACCATAGTCTCAGCTTCAGCTATGCAGAAGACAACGACGACGACGTTTTGTGTCATCGTAATTTCCGCTCTAACTCCTCGTCGTCCCAAGCTACATTGTTAGGCTTCATCGGCTCCCCGAGCAAAAACCGAAACATACCAAATGGTTTTAGTTGGTTCCCAGATGACACCCTTGATGATAGCAGTTCACAATGCTCGTCGACATCGGGAACGTACTCCAACTTCAATTACATCAGCAACGACGAGTACGAAACCAGTTCGGTTCGAACAGATCAACATAAGATTCACAGCTCCTCGAGATTTTGTCCCGTTGAGAACCGGAAAAACAAGGATTTCTTGGGTGGAGTTTTGTACAAGCCGAGCCAATGTGCAGTCGGGGCGTCCCAAGGAGCAGCATCGAGTCGTAAAGACAAGAGGGGAGGAACGGATGGGCGTAGATTAACAAGAAACAGGTCACTAGTTGATGTACACAGCCAATTGTTGCATCTTTCGTTGGTCGAGGAAGTGAATAGAAGACGGTTATTCAAGACGGTCGGAGCGGTTGAAAGCATCGGTTTTCAAGCGCCTTGTGAGGTTTCTTCGAGCAGCAAAAGGGTGTCGAGTAGGCAAGCGATCGGGAACCGAAGTAGCGATGTAACGAGAACGAGAAGAAATGGTGATACTAGGCAAGATGTTTGGAAGAGAACATGA 1890 46.3 MFKNSKSEYGYVETDPTSRYGRFEEVLGKGAMKTVYKAIDEFLGIEVAWSRVKLNEVLRSPEDLQRLYSEVHLLSTLKHESIMQFYTSWIDVDHKTFNFITELFTSGTLREYGKRYSQVDIRAIKSWARQILLGLVYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSKSAHSVIGTPEFMAPELYEEDYNELVDVYSFGMCVLEMLTAEYPYSECSNPAQIYKKVTSGKLPAALYKIQDVEAQRFIKKCLVPVSMRASAKELLADPFLMVDGDRPSSKERKQTQKPFLNAKEMEKLHLGDGLSRTKMTITGKLNHEDDTLFLRVQTADKDGSLRNIYFPFDIVNDTALDVAIEMVKELEISDWEPFEIADMIEGEISALVPNWNRSELSNHSLSFSYAEDNDDDVLCHRNFRSNSSSSQATLLGFIGSPSKNRNIPNGFSWFPDDTLDDSSSQCSSTSGTYSNFNYISNDEYETSSVRTDQHKIHSSSRFCPVENRKNKDFLGGVLYKPSQCAVGASQGAASSRKDKRGGTDGRRLTRNRSLVDVHSQLLHLSLVEEVNRRRLFKTVGAVESIGFQAPCEVSSSSKRVSSRQAIGNRSSDVTRTRRNGDTRQDVWKRT 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4415242 4419037 + CmoCh02G007000.1 Cmo02g00700 376297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00700 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cmo02g00700 629 MobiDBLite consensus disorder prediction 613 629 - -
Cmo02g00700 629 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED 4 617 - -
Cmo02g00700 629 MobiDBLite consensus disorder prediction 597 612 - -
Cmo02g00700 629 Gene3D Phosphorylase Kinase; domain 1 5 102 - -
Cmo02g00700 629 MobiDBLite consensus disorder prediction 597 629 - -
Cmo02g00700 629 MobiDBLite consensus disorder prediction 527 546 - -
Cmo02g00700 629 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 617 - -
Cmo02g00700 629 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00700 629 CDD STKc_WNK 19 279 - -
Cmo02g00700 629 SMART serkin_6 21 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00700 629 Gene3D Transferase(Phosphotransferase) domain 1 104 283 - -
Cmo02g00700 629 SUPERFAMILY Protein kinase-like (PK-like) 23 280 IPR011009 -
Cmo02g00700 629 ProSiteProfiles Protein kinase domain profile. 21 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00700 Cmo20g00336 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00700 Cmo-Chr2:4415242 Cmo08g01121 Cmo-Chr8:7145129 1.37E-167 dispersed
Cmo02g00700 Cmo-Chr2:4415242 Cmo20g00336 Cmo-Chr20:1658918 0 wgd
Cmo02g00700 Cmo-Chr2:4415242 Cmo03g00308 Cmo-Chr3:4283942 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74104 PF00069 Pkinase 8.00E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00700 K08867 - csv:101203757 1039.25