Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00706 | ATGGATAATAAGCAGATTGTGGTGGTTCAAAGATATGAATTAGGTAGATTACTCGGCCAAGGAACCTTTGCGAAGGTATATTATGCGAGAAATACAGAAACTAATCAAAGCGTGGCCATTAAGGTGATTGATAAAGAAAAGATCACGAAGGCTTCGCTAATAGATCAGATTAAGCGTGAAATATCTATTATGCGACTTGTTAGGCATCCTAATATTATACATCTATATGAGGTTATGGCCACCAAGACTAAGATCTACTTCGCCTTGGAATATGCTAAAGGCGGTGAGCTCTTTGACAAGGTTGCTAAAGGGAGGCTGAGGGAAGAAGTTGCTTGGAAATACTTTTATCAGTTGATCAATGCTGTTGATTTTTGTCACAGTAGGGGAGTATATCACCGTGATATAAAGCCAGAGAACCTACTTCTTGATGAAAATGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTTTAGCCGAGTCCAAGCGCCAAGATGGGTTGCTACACACTACTTGTGGTACTCCAGCTTATGTTGCTCCTGAAGTCATCAATAGGAAGGGCTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGCAGTCTTGTTCGTCTTATTGGCAGGTTATCTACCATTCCACGATTCAAATTTAATGGAGATGTATAGGAAAATTGGAAAAGCGGACTATAAATGCCCTAGTTGGTTCCCTCGTGATGTACGTCGGCTGCTTATGAGGATGCTTGATCCAAACCCCGCTACTAGAACTTCCATAGCAATGATAAGGCAAAGTTCCTGGTTCAAAAAAGGATTGAGGTTTAAGATGTTAAGAAGTGAAACAGGAAGTGATGCTAAAGCGAGTGAAGATGCAGCAGCTGTTTCTGAAACATCAGAGAGCAGTAGTGTGTCAGCAGATGGAAATCAAGAGCCAGATAGACCTCCGACGTTGAACGCTTTCGATATCATCTCCCTTTCTGCTGGGTTCAATCTATCCAGTTTATTTGAAGACAACTCAAAGAGGAAAGAAACATTGTTTACTTGTAGAAAACCGGCCTCTGTTATTCTCTCCAAGCTAGAAGATATCGCTAAACTTCTCAGGTTTCGGGTGCAGAAGAAGGAAGCAGGCCTACTGAAGTTCGAGGCGCTGACAGAGGGTAAAAAGGGGCCTTTGTCCATTGATACAGAGATATTTGAGATTACTCCATCCTTTTATTTGGTGGAGATGAAAAAATCCAATGGGGACACATTGGAGTATCAGAAGATATTAAAAGAGGACATAAGACCAGCTCTACAGGATATTGTATGGGTATGGCGAGCCGAGCAGGCGCAGGAGCAGCAGCAACAACAGCCTCAGCCTCCGCCTCCGCATCAGCCTCTCGAACTGCAGGATCGGGATCCATATCTGGACCAAGAGGGTGTGTCACAACAGCAGTAG | 1431 | 43.05 | MDNKQIVVVQRYELGRLLGQGTFAKVYYARNTETNQSVAIKVIDKEKITKASLIDQIKREISIMRLVRHPNIIHLYEVMATKTKIYFALEYAKGGELFDKVAKGRLREEVAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGAVLFVLLAGYLPFHDSNLMEMYRKIGKADYKCPSWFPRDVRRLLMRMLDPNPATRTSIAMIRQSSWFKKGLRFKMLRSETGSDAKASEDAAAVSETSESSSVSADGNQEPDRPPTLNAFDIISLSAGFNLSSLFEDNSKRKETLFTCRKPASVILSKLEDIAKLLRFRVQKKEAGLLKFEALTEGKKGPLSIDTEIFEITPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWRAEQAQEQQQQQPQPPPPHQPLELQDRDPYLDQEGVSQQQ | 476 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4431875 | 4433305 | - | CmoCh02G007060.1 | Cmo02g00706 | 376303 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00706 | 476 | CDD | CIPK_C | 316 | 430 | - | - | |
Cmo02g00706 | 476 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 | 2 | 449 | - | - | |
Cmo02g00706 | 476 | MobiDBLite | consensus disorder prediction | 283 | 311 | - | - | |
Cmo02g00706 | 476 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo02g00706 | 476 | Gene3D | Kinase associated domain 1, KA1 | 314 | 435 | - | - | |
Cmo02g00706 | 476 | ProSiteProfiles | NAF domain profile. | 310 | 334 | IPR018451 | GO:0007165 | |
Cmo02g00706 | 476 | PANTHER | - | 2 | 449 | - | - | |
Cmo02g00706 | 476 | MobiDBLite | consensus disorder prediction | 440 | 476 | - | - | |
Cmo02g00706 | 476 | ProSiteProfiles | Protein kinase domain profile. | 12 | 266 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g00706 | 476 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 267 | IPR011009 | - | |
Cmo02g00706 | 476 | ProSitePatterns | Protein kinases ATP-binding region signature. | 18 | 41 | IPR017441 | GO:0005524 | |
Cmo02g00706 | 476 | MobiDBLite | consensus disorder prediction | 291 | 309 | - | - | |
Cmo02g00706 | 476 | Pfam | Protein kinase domain | 12 | 266 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g00706 | 476 | Gene3D | Transferase(Phosphotransferase) domain 1 | 3 | 313 | - | - | |
Cmo02g00706 | 476 | SMART | serkin_6 | 12 | 266 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g00706 | 476 | Pfam | NAF domain | 312 | 370 | IPR004041 | GO:0007165 | |
Cmo02g00706 | 476 | CDD | STKc_SnRK3 | 11 | 265 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00706 | Cmo20g00339 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00706 | Cmo-Chr2:4431875 | Cmo07g01272 | Cmo-Chr7:6994481 | 0 | dispersed | |
Cmo02g00706 | Cmo-Chr2:4431875 | Cmo20g00339 | Cmo-Chr20:1670464 | 0 | wgd | |
Cmo02g00706 | Cmo-Chr2:4431875 | Cmo03g00316 | Cmo-Chr3:4336478 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74106 | PF00069 | Pkinase | 9.20E-74 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00706 | - | - | csv:101206404 | 772.311 |