Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00706 ATGGATAATAAGCAGATTGTGGTGGTTCAAAGATATGAATTAGGTAGATTACTCGGCCAAGGAACCTTTGCGAAGGTATATTATGCGAGAAATACAGAAACTAATCAAAGCGTGGCCATTAAGGTGATTGATAAAGAAAAGATCACGAAGGCTTCGCTAATAGATCAGATTAAGCGTGAAATATCTATTATGCGACTTGTTAGGCATCCTAATATTATACATCTATATGAGGTTATGGCCACCAAGACTAAGATCTACTTCGCCTTGGAATATGCTAAAGGCGGTGAGCTCTTTGACAAGGTTGCTAAAGGGAGGCTGAGGGAAGAAGTTGCTTGGAAATACTTTTATCAGTTGATCAATGCTGTTGATTTTTGTCACAGTAGGGGAGTATATCACCGTGATATAAAGCCAGAGAACCTACTTCTTGATGAAAATGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTTTAGCCGAGTCCAAGCGCCAAGATGGGTTGCTACACACTACTTGTGGTACTCCAGCTTATGTTGCTCCTGAAGTCATCAATAGGAAGGGCTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGCAGTCTTGTTCGTCTTATTGGCAGGTTATCTACCATTCCACGATTCAAATTTAATGGAGATGTATAGGAAAATTGGAAAAGCGGACTATAAATGCCCTAGTTGGTTCCCTCGTGATGTACGTCGGCTGCTTATGAGGATGCTTGATCCAAACCCCGCTACTAGAACTTCCATAGCAATGATAAGGCAAAGTTCCTGGTTCAAAAAAGGATTGAGGTTTAAGATGTTAAGAAGTGAAACAGGAAGTGATGCTAAAGCGAGTGAAGATGCAGCAGCTGTTTCTGAAACATCAGAGAGCAGTAGTGTGTCAGCAGATGGAAATCAAGAGCCAGATAGACCTCCGACGTTGAACGCTTTCGATATCATCTCCCTTTCTGCTGGGTTCAATCTATCCAGTTTATTTGAAGACAACTCAAAGAGGAAAGAAACATTGTTTACTTGTAGAAAACCGGCCTCTGTTATTCTCTCCAAGCTAGAAGATATCGCTAAACTTCTCAGGTTTCGGGTGCAGAAGAAGGAAGCAGGCCTACTGAAGTTCGAGGCGCTGACAGAGGGTAAAAAGGGGCCTTTGTCCATTGATACAGAGATATTTGAGATTACTCCATCCTTTTATTTGGTGGAGATGAAAAAATCCAATGGGGACACATTGGAGTATCAGAAGATATTAAAAGAGGACATAAGACCAGCTCTACAGGATATTGTATGGGTATGGCGAGCCGAGCAGGCGCAGGAGCAGCAGCAACAACAGCCTCAGCCTCCGCCTCCGCATCAGCCTCTCGAACTGCAGGATCGGGATCCATATCTGGACCAAGAGGGTGTGTCACAACAGCAGTAG 1431 43.05 MDNKQIVVVQRYELGRLLGQGTFAKVYYARNTETNQSVAIKVIDKEKITKASLIDQIKREISIMRLVRHPNIIHLYEVMATKTKIYFALEYAKGGELFDKVAKGRLREEVAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGAVLFVLLAGYLPFHDSNLMEMYRKIGKADYKCPSWFPRDVRRLLMRMLDPNPATRTSIAMIRQSSWFKKGLRFKMLRSETGSDAKASEDAAAVSETSESSSVSADGNQEPDRPPTLNAFDIISLSAGFNLSSLFEDNSKRKETLFTCRKPASVILSKLEDIAKLLRFRVQKKEAGLLKFEALTEGKKGPLSIDTEIFEITPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWRAEQAQEQQQQQPQPPPPHQPLELQDRDPYLDQEGVSQQQ 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4431875 4433305 - CmoCh02G007060.1 Cmo02g00706 376303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00706 476 CDD CIPK_C 316 430 - -
Cmo02g00706 476 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 449 - -
Cmo02g00706 476 MobiDBLite consensus disorder prediction 283 311 - -
Cmo02g00706 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cmo02g00706 476 Gene3D Kinase associated domain 1, KA1 314 435 - -
Cmo02g00706 476 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Cmo02g00706 476 PANTHER - 2 449 - -
Cmo02g00706 476 MobiDBLite consensus disorder prediction 440 476 - -
Cmo02g00706 476 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00706 476 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Cmo02g00706 476 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cmo02g00706 476 MobiDBLite consensus disorder prediction 291 309 - -
Cmo02g00706 476 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00706 476 Gene3D Transferase(Phosphotransferase) domain 1 3 313 - -
Cmo02g00706 476 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00706 476 Pfam NAF domain 312 370 IPR004041 GO:0007165
Cmo02g00706 476 CDD STKc_SnRK3 11 265 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00706 Cmo20g00339 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00706 Cmo-Chr2:4431875 Cmo07g01272 Cmo-Chr7:6994481 0 dispersed
Cmo02g00706 Cmo-Chr2:4431875 Cmo20g00339 Cmo-Chr20:1670464 0 wgd
Cmo02g00706 Cmo-Chr2:4431875 Cmo03g00316 Cmo-Chr3:4336478 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74106 PF00069 Pkinase 9.20E-74 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00706 - - csv:101206404 772.311