Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00711 ATGGTTATGGAGTTCTTCTTCTCCAGTAGAGTTGAGGAGGATCCCACCGACGGCCGTCCCAGACTGCCGGAGAGTACGGCACCGCCCATTTCTTCTAAGTTCAGTTCGACTCCGAATCCGAATCCGCCATTGTTGTCGGCCATGTCTCAGCCTCTGTTCTCCCCTTCTTCCTTCTTCACTATCCCTCCAGGGATCAGCCCCACCCAACTTCTCGATTCCCCTGTTCTTCTTACCTCCTCTAATTTTCAGGCATCACCGACCACCGGAGCAATTTCGACCAGCCACCACCAAAAGAACATGAAACAAGAACAACATAACTTAGCTGAGTTCTCATTTCCTCGTACAAATCCCACAAAATCATCATCTTCATCATCAATAATGTTTCAATCGTCTTCAATGCAGCAAAATCAGGCATGGGTATCTCAAGCCGCCTTCAATTTCCCGCCGGAGACCACCGTGAACGGCGGTTCGAAATCCGACCAGCACCCACAATCTCAACCAAAAAACAGAGCATCTGACGACGGGTATAATTGGAGGAAATACGGCCAAAAACTTGTAAAAGGAAGTGAAAATCCCAGAAGCTATTACAAATGTACACACCCTACTTGCCCTGTTAGAAAGCAAGTCGAAAAATCATTGAACGGCCAAATCACAGAAATCGTTTACAAAAGTAAACACAATCATCCAAAACCAGAGTTCCCAAGAAGATTATCATCGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGGCTATCACAAGCTTTACCTCAAACAATGGCGGTAGAGCCGAAGCATTCAATGGCCTCTGATTCCGTTCCGACGCCGGAGAACTCTTCAACCATGATTGGGGATGATGATTCCGATGAACTTGATGCAAAAAGATGGAAAAGCGAGAGCGAGAACGAAATTATATTGGTCGCCGGAGGTAAAACGGTGAGAGAACAGAGGGTTGTGGTTCAAACGATTAGTAGGGTTGATAAACTAGACGATGGATATTGGTGGAGAAAATATGGACAGAAAGTTGTGAAGGGAAATCCAAATCCAAGGAGCTACTACAAGTGCACGTACGCAGGCTGTGGAGTGAGAAAGCACATAGAGAGGGCGTCCCACGATTTGAAGGCCGTTATCACTACCTACGAAGGCAAGCATAACCATGAAATTCCGGCAGCCCGCGGCGGAGGTAGCAGACCAGTCTCCAATAATCACGGCAACGACAACGGTCATGCATCAAACGGCGGCAGCGGTGACATATGGCCGAGTTCCGAGGTTTCTGGTGGCGATGATGGATTCTCTAACATGCTGTGGAGGACCAAAGAAGATGCCGCCGATGAGATTTTCCGGTCGTTGTTAGACTGA 1362 47.43 MVMEFFFSSRVEEDPTDGRPRLPESTAPPISSKFSSTPNPNPPLLSAMSQPLFSPSSFFTIPPGISPTQLLDSPVLLTSSNFQASPTTGAISTSHHQKNMKQEQHNLAEFSFPRTNPTKSSSSSSIMFQSSSMQQNQAWVSQAAFNFPPETTVNGGSKSDQHPQSQPKNRASDDGYNWRKYGQKLVKGSENPRSYYKCTHPTCPVRKQVEKSLNGQITEIVYKSKHNHPKPEFPRRLSSASSSSSSSSSSSWLSQALPQTMAVEPKHSMASDSVPTPENSSTMIGDDDSDELDAKRWKSESENEIILVAGGKTVREQRVVVQTISRVDKLDDGYWWRKYGQKVVKGNPNPRSYYKCTYAGCGVRKHIERASHDLKAVITTYEGKHNHEIPAARGGGSRPVSNNHGNDNGHASNGGSGDIWPSSEVSGGDDGFSNMLWRTKEDAADEIFRSLLD 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4449430 4452521 + CmoCh02G007110.1 Cmo02g00711 376308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00711 453 MobiDBLite consensus disorder prediction 147 172 - -
Cmo02g00711 453 MobiDBLite consensus disorder prediction 147 177 - -
Cmo02g00711 453 SUPERFAMILY WRKY DNA-binding domain 322 390 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo02g00711 453 MobiDBLite consensus disorder prediction 1 48 - -
Cmo02g00711 453 Pfam WRKY DNA -binding domain 173 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo02g00711 453 Pfam WRKY DNA -binding domain 331 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo02g00711 453 MobiDBLite consensus disorder prediction 236 258 - -
Cmo02g00711 453 MobiDBLite consensus disorder prediction 385 424 - -
Cmo02g00711 453 Gene3D WRKY domain 315 391 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo02g00711 453 Gene3D WRKY domain 157 232 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo02g00711 453 ProSiteProfiles WRKY domain profile. 325 390 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo02g00711 453 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 38 403 IPR044810 GO:0003700
Cmo02g00711 453 MobiDBLite consensus disorder prediction 222 296 - -
Cmo02g00711 453 PANTHER WRKY TRANSCRIPTION FACTOR 33-RELATED 38 403 - -
Cmo02g00711 453 MobiDBLite consensus disorder prediction 399 420 - -
Cmo02g00711 453 SUPERFAMILY WRKY DNA-binding domain 170 231 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo02g00711 453 SMART WRKY_cls 330 389 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo02g00711 453 SMART WRKY_cls 172 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo02g00711 453 MobiDBLite consensus disorder prediction 28 48 - -
Cmo02g00711 453 ProSiteProfiles WRKY domain profile. 173 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00711 Cmo13g00017 CCT
Cmo02g00711 Cmo13g00017 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00711 Cmo-Chr2:4449430 Cmo14g00029 Cmo-Chr14:153073 3.42E-94 dispersed
Cmo01g00737 Cmo-Chr1:3806759 Cmo02g00711 Cmo-Chr2:4449430 5.51E-110 wgd
Cmo13g00017 Cmo-Chr13:167081 Cmo02g00711 Cmo-Chr2:4449430 1.68E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9244 PF03106 WRKY 3.30E-23 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00711 K13424 - tcc:18591046 398.667