Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00711 | ATGGTTATGGAGTTCTTCTTCTCCAGTAGAGTTGAGGAGGATCCCACCGACGGCCGTCCCAGACTGCCGGAGAGTACGGCACCGCCCATTTCTTCTAAGTTCAGTTCGACTCCGAATCCGAATCCGCCATTGTTGTCGGCCATGTCTCAGCCTCTGTTCTCCCCTTCTTCCTTCTTCACTATCCCTCCAGGGATCAGCCCCACCCAACTTCTCGATTCCCCTGTTCTTCTTACCTCCTCTAATTTTCAGGCATCACCGACCACCGGAGCAATTTCGACCAGCCACCACCAAAAGAACATGAAACAAGAACAACATAACTTAGCTGAGTTCTCATTTCCTCGTACAAATCCCACAAAATCATCATCTTCATCATCAATAATGTTTCAATCGTCTTCAATGCAGCAAAATCAGGCATGGGTATCTCAAGCCGCCTTCAATTTCCCGCCGGAGACCACCGTGAACGGCGGTTCGAAATCCGACCAGCACCCACAATCTCAACCAAAAAACAGAGCATCTGACGACGGGTATAATTGGAGGAAATACGGCCAAAAACTTGTAAAAGGAAGTGAAAATCCCAGAAGCTATTACAAATGTACACACCCTACTTGCCCTGTTAGAAAGCAAGTCGAAAAATCATTGAACGGCCAAATCACAGAAATCGTTTACAAAAGTAAACACAATCATCCAAAACCAGAGTTCCCAAGAAGATTATCATCGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGGCTATCACAAGCTTTACCTCAAACAATGGCGGTAGAGCCGAAGCATTCAATGGCCTCTGATTCCGTTCCGACGCCGGAGAACTCTTCAACCATGATTGGGGATGATGATTCCGATGAACTTGATGCAAAAAGATGGAAAAGCGAGAGCGAGAACGAAATTATATTGGTCGCCGGAGGTAAAACGGTGAGAGAACAGAGGGTTGTGGTTCAAACGATTAGTAGGGTTGATAAACTAGACGATGGATATTGGTGGAGAAAATATGGACAGAAAGTTGTGAAGGGAAATCCAAATCCAAGGAGCTACTACAAGTGCACGTACGCAGGCTGTGGAGTGAGAAAGCACATAGAGAGGGCGTCCCACGATTTGAAGGCCGTTATCACTACCTACGAAGGCAAGCATAACCATGAAATTCCGGCAGCCCGCGGCGGAGGTAGCAGACCAGTCTCCAATAATCACGGCAACGACAACGGTCATGCATCAAACGGCGGCAGCGGTGACATATGGCCGAGTTCCGAGGTTTCTGGTGGCGATGATGGATTCTCTAACATGCTGTGGAGGACCAAAGAAGATGCCGCCGATGAGATTTTCCGGTCGTTGTTAGACTGA | 1362 | 47.43 | MVMEFFFSSRVEEDPTDGRPRLPESTAPPISSKFSSTPNPNPPLLSAMSQPLFSPSSFFTIPPGISPTQLLDSPVLLTSSNFQASPTTGAISTSHHQKNMKQEQHNLAEFSFPRTNPTKSSSSSSIMFQSSSMQQNQAWVSQAAFNFPPETTVNGGSKSDQHPQSQPKNRASDDGYNWRKYGQKLVKGSENPRSYYKCTHPTCPVRKQVEKSLNGQITEIVYKSKHNHPKPEFPRRLSSASSSSSSSSSSSWLSQALPQTMAVEPKHSMASDSVPTPENSSTMIGDDDSDELDAKRWKSESENEIILVAGGKTVREQRVVVQTISRVDKLDDGYWWRKYGQKVVKGNPNPRSYYKCTYAGCGVRKHIERASHDLKAVITTYEGKHNHEIPAARGGGSRPVSNNHGNDNGHASNGGSGDIWPSSEVSGGDDGFSNMLWRTKEDAADEIFRSLLD | 453 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4449430 | 4452521 | + | CmoCh02G007110.1 | Cmo02g00711 | 376308 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00711 | 453 | MobiDBLite | consensus disorder prediction | 147 | 172 | - | - | |
Cmo02g00711 | 453 | MobiDBLite | consensus disorder prediction | 147 | 177 | - | - | |
Cmo02g00711 | 453 | SUPERFAMILY | WRKY DNA-binding domain | 322 | 390 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo02g00711 | 453 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Cmo02g00711 | 453 | Pfam | WRKY DNA -binding domain | 173 | 229 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo02g00711 | 453 | Pfam | WRKY DNA -binding domain | 331 | 388 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo02g00711 | 453 | MobiDBLite | consensus disorder prediction | 236 | 258 | - | - | |
Cmo02g00711 | 453 | MobiDBLite | consensus disorder prediction | 385 | 424 | - | - | |
Cmo02g00711 | 453 | Gene3D | WRKY domain | 315 | 391 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo02g00711 | 453 | Gene3D | WRKY domain | 157 | 232 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo02g00711 | 453 | ProSiteProfiles | WRKY domain profile. | 325 | 390 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo02g00711 | 453 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 38 | 403 | IPR044810 | GO:0003700 | |
Cmo02g00711 | 453 | MobiDBLite | consensus disorder prediction | 222 | 296 | - | - | |
Cmo02g00711 | 453 | PANTHER | WRKY TRANSCRIPTION FACTOR 33-RELATED | 38 | 403 | - | - | |
Cmo02g00711 | 453 | MobiDBLite | consensus disorder prediction | 399 | 420 | - | - | |
Cmo02g00711 | 453 | SUPERFAMILY | WRKY DNA-binding domain | 170 | 231 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo02g00711 | 453 | SMART | WRKY_cls | 330 | 389 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo02g00711 | 453 | SMART | WRKY_cls | 172 | 230 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo02g00711 | 453 | MobiDBLite | consensus disorder prediction | 28 | 48 | - | - | |
Cmo02g00711 | 453 | ProSiteProfiles | WRKY domain profile. | 173 | 231 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00711 | Cmo13g00017 | CCT | |
Cmo02g00711 | Cmo13g00017 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00711 | Cmo-Chr2:4449430 | Cmo14g00029 | Cmo-Chr14:153073 | 3.42E-94 | dispersed | |
Cmo01g00737 | Cmo-Chr1:3806759 | Cmo02g00711 | Cmo-Chr2:4449430 | 5.51E-110 | wgd | |
Cmo13g00017 | Cmo-Chr13:167081 | Cmo02g00711 | Cmo-Chr2:4449430 | 1.68E-113 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9244 | PF03106 | WRKY | 3.30E-23 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00711 | K13424 | - | tcc:18591046 | 398.667 |