Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00726 | ATGGGAGCTGGTTCATCGCCATGCGCCTCCTGCAAATTGCTACGGCGGCGGTGCGCCAAGGACTGCATTTTCGCCCCTTATTTCCCTCCCGACGACCCTCACAAGTTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGAGCTGCCGCTGGATCAAAGACCCGATGCCGTGAACAGTATGGTATATGAAGCGAGTGCTAGAATGCGAGACCCGGTTTACGGATGTGTAGGAGCCATCACATTCCTCCAAAACCAGGTGTCCCGATTGGAAATGCAACTGGCCGCGGCGCAGGCGGAGATTTTGAGCTTTCAGATGCAACAACAGGCGGCTCCGGCGAGTTTTCCGATGACCCAGATGAACCAATATGATCAAAATCTTGTTTTTCTATCAAATGCTGATTCTTTTAATTCCGTTGATGGTTCACCGGAAGTTGAAGATTATTGCTCTCTGTGGAGTTGA | 480 | 50.83 | MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQRPDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPASFPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS | 159 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4587924 | 4588403 | + | CmoCh02G007260.1 | Cmo02g00726 | 376323 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00726 | 159 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
Cmo02g00726 | 159 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 12-LIKE | 1 | 125 | - | - | |
Cmo02g00726 | 159 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - | |
Cmo02g00726 | 159 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 125 | - | - | |
Cmo02g00726 | 159 | Coils | Coil | 86 | 113 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00726 | Cmo-Chr2:4587924 | Cmo04g00129 | Cmo-Chr4:659700 | 6.60E-67 | dispersed | |
Cmo04g01140 | Cmo-Chr4:5821060 | Cmo02g00726 | Cmo-Chr2:4587924 | 1.90E-47 | dispersed | |
Cmo02g00726 | Cmo-Chr2:4587924 | Cmo20g00354 | Cmo-Chr20:1742608 | 4.42E-71 | wgd | |
Cmo02g00726 | Cmo-Chr2:4587924 | Cmo04g01166 | Cmo-Chr4:5949123 | 2.36E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9245 | PF03195 | LOB | 6.40E-41 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00726 | - | - | csv:101207667 | 233.417 |