Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00726 ATGGGAGCTGGTTCATCGCCATGCGCCTCCTGCAAATTGCTACGGCGGCGGTGCGCCAAGGACTGCATTTTCGCCCCTTATTTCCCTCCCGACGACCCTCACAAGTTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGAGCTGCCGCTGGATCAAAGACCCGATGCCGTGAACAGTATGGTATATGAAGCGAGTGCTAGAATGCGAGACCCGGTTTACGGATGTGTAGGAGCCATCACATTCCTCCAAAACCAGGTGTCCCGATTGGAAATGCAACTGGCCGCGGCGCAGGCGGAGATTTTGAGCTTTCAGATGCAACAACAGGCGGCTCCGGCGAGTTTTCCGATGACCCAGATGAACCAATATGATCAAAATCTTGTTTTTCTATCAAATGCTGATTCTTTTAATTCCGTTGATGGTTCACCGGAAGTTGAAGATTATTGCTCTCTGTGGAGTTGA 480 50.83 MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQRPDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPASFPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4587924 4588403 + CmoCh02G007260.1 Cmo02g00726 376323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00726 159 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cmo02g00726 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 125 - -
Cmo02g00726 159 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Cmo02g00726 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 125 - -
Cmo02g00726 159 Coils Coil 86 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00726 Cmo-Chr2:4587924 Cmo04g00129 Cmo-Chr4:659700 6.60E-67 dispersed
Cmo04g01140 Cmo-Chr4:5821060 Cmo02g00726 Cmo-Chr2:4587924 1.90E-47 dispersed
Cmo02g00726 Cmo-Chr2:4587924 Cmo20g00354 Cmo-Chr20:1742608 4.42E-71 wgd
Cmo02g00726 Cmo-Chr2:4587924 Cmo04g01166 Cmo-Chr4:5949123 2.36E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9245 PF03195 LOB 6.40E-41 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00726 - - csv:101207667 233.417