Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00746 ATGGATGGTTGCAATAGAAATCTGGGGTTTTGTATATCGGTTTTGCTCGAATTTTCGGCCACGGATGATCTGATTGGATTTAGGAGTGCTGTTGAGGAAGATGGTCATGATATTGATGAAGCAAGTTTGTGGTATGGGAGAGTTTTTGGTTCCAAAAAGATGGGATATGAAGAACGAACCCCTCTTATGGTTGCAGCCATGTTTGGGAGCTTGAATGTCCTTTCGTATATCGTTCATAGTGGTCGTGTTGATGTTAATCGAGCTTGCGGTTCGGATGGTGCAACTGCTCTCCATTGTGCTGTTGCTGGTGGTTCTGCTGTTGCTGATCAGGTTGTCAAATACTTGCTTGATGCTTTTGCTGATGTGAATGTTGTCGATGCGAATGGCTACCGGCCTGGTGACTTGATTGCTCCTGATTTTACTTTGGCGTCTTTGTATTCGAGGAGGAAGGCATTACAACAGTTGCTAAAGGGATATGGTAACGACGAGGACGTTCTTGGTTCATCTGAGATGATTTTTTACGAGAGGGAAACACAGGAGGCACGGGAGGTTTTGACGCCTCGTGTTTTGAGAGATGGAACGGAGAAGAAAGAGTATCCAGTTGATCACTCGCTTCCCGACATCAAGAATGGGATTTATAGTACAGATGAGTTTAGAATGTATACTTTTAAGATTAAACCTTGTACAAGAGCTTACTCCCATGATTGGACGGAGTGCCCGTTTGTTCACCCTGGCGAAAACGCAAGAAGGCGGGATCCTAGGAAATATCATTACAGCTGCGTCCCGTGTCCCGAATTTAGAAAGGGCGCATGTAGGCAGGGGGATGCCTGTGAATATGCTCATGGAATCTTTGAATGTTGGCTCCATCCTGCTCAATACCGCACCCGTCTTTGCAAGGACGAAACGGGATGCACCCGAAAGGTCTGTTTCTTTGCTCACAAACCAGAGGAGCTACGCCCCTTGTATGCTTCGACTGGTTCTGCTGTACTGTCCCCAAGATCGATCTCTGGTTCATCACTAGACATTCCATCAATCAGCCTGCTTACCCTTGGTTCTCCGTCATCGACTCCGCCGTTGACTCCTGGAGTTTCTTCTCCGCTGGGTGGAACCATGTGGCAGACTCAATGTAATATTGCGCCTCCGACGTTGCAGCTTCCGGGTAGCCGGTTGAAGGCTGCTTTGAGTGCAAGAGACATGGATTTAGATGCCGAGTTACTCGGTCTCGAAAGTCAGCGACGTAGACAGCAACAGTTTATGGATGAGTTATCGTGTCTACCTTCCCCTTCCAGATGGAACAATGGCATACCAACCCCTACATCTTTTCCATCTCCAAGGAGTAGAAATGGAGAATTGAACGGGCTCGGAGGCATGAATCCTACTAACCTCGAGAACATTTACGGATCATCGGTAGATCCCGCACTCTTCCCTCAATTACAAGGACTCTCGCTCGATTCCGTGCAATCCCCGTCCGGGATGCGCCAGAGCCTGAACCAGTCATTCCTATCAAACTATGCTAACAGCATTGGATCTCCTCCTGCAAGGTCATCTCAACCATTTGGCCATGACTCATCTGTGTCTGCTGCAGAAAGCCTTCTGAGTTCCAGGGCTGCTGCTTTTGCCAAGCGCAGCCACAGCTTTATCGAACGCGGTGTAGTGAACCGTCATTCTGGACATTCACCTCCAGCTACATCTACAACCGTCACGCCTTCGAACTTCCCTGATTGGGGTTCGCCCAACGGAAAACTAGACTGGGGAATTCACGGAGAAGAACTCACCAAGTTAAGAAAGTCTGCATCATTCGGGCTACGAAGTAATTCCCTCGCAACACCTGCAATGCACGCTACTTCTTCCAAGCCAGACGTCTCCTGGGTTCAGTCCCTGGTGAACGATGCTCCGACCGAGAACTCCGTGCAGTTGAGCATGGACGAGCAGCAGCTTTGTCATATCGACAATGGGGATTCAAAGCTGTACATGGAACAGAAGCAGCTGGTCGCTTAA 1998 48.7 MDGCNRNLGFCISVLLEFSATDDLIGFRSAVEEDGHDIDEASLWYGRVFGSKKMGYEERTPLMVAAMFGSLNVLSYIVHSGRVDVNRACGSDGATALHCAVAGGSAVADQVVKYLLDAFADVNVVDANGYRPGDLIAPDFTLASLYSRRKALQQLLKGYGNDEDVLGSSEMIFYERETQEAREVLTPRVLRDGTEKKEYPVDHSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGACRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVLSPRSISGSSLDIPSISLLTLGSPSSTPPLTPGVSSPLGGTMWQTQCNIAPPTLQLPGSRLKAALSARDMDLDAELLGLESQRRRQQQFMDELSCLPSPSRWNNGIPTPTSFPSPRSRNGELNGLGGMNPTNLENIYGSSVDPALFPQLQGLSLDSVQSPSGMRQSLNQSFLSNYANSIGSPPARSSQPFGHDSSVSAAESLLSSRAAAFAKRSHSFIERGVVNRHSGHSPPATSTTVTPSNFPDWGSPNGKLDWGIHGEELTKLRKSASFGLRSNSLATPAMHATSSKPDVSWVQSLVNDAPTENSVQLSMDEQQLCHIDNGDSKLYMEQKQLVA 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4682284 4684281 - CmoCh02G007460.1 Cmo02g00746 376343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00746 665 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 282 IPR000571 GO:0046872
Cmo02g00746 665 MobiDBLite consensus disorder prediction 429 454 - -
Cmo02g00746 665 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Cmo02g00746 665 MobiDBLite consensus disorder prediction 557 574 - -
Cmo02g00746 665 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Cmo02g00746 665 SUPERFAMILY Ankyrin repeat 54 133 IPR036770 -
Cmo02g00746 665 ProSiteProfiles Zinc finger C3H1-type profile. 262 284 IPR000571 GO:0046872
Cmo02g00746 665 SMART ANK_2a 57 87 IPR002110 GO:0005515
Cmo02g00746 665 SMART ANK_2a 92 124 IPR002110 GO:0005515
Cmo02g00746 665 Pfam Ankyrin repeats (3 copies) 55 126 IPR002110 GO:0005515
Cmo02g00746 665 SMART c3hfinal6 292 315 IPR000571 GO:0046872
Cmo02g00746 665 SMART c3hfinal6 257 283 IPR000571 GO:0046872
Cmo02g00746 665 Gene3D - 22 156 IPR036770 -
Cmo02g00746 665 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 12 663 - -
Cmo02g00746 665 PANTHER UNKEMPT FAMILY MEMBER 12 663 IPR045234 -
Cmo02g00746 665 MobiDBLite consensus disorder prediction 552 574 - -
Cmo02g00746 665 Gene3D - 257 320 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00746 Cmo20g00367 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00746 Cmo-Chr2:4682284 Cmo04g00148 Cmo-Chr4:775143 0 dispersed
Cmo02g00746 Cmo-Chr2:4682284 Cmo20g00367 Cmo-Chr20:1811451 0 wgd
Cmo02g00746 Cmo-Chr2:4682284 Cmo04g01178 Cmo-Chr4:6019943 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9247 PF12796 Ank_2 2.40E-08 CL0465 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00746 - - csv:101213761 1033.09