Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00797 ATGGCCGCCATTATTTCTCTCTGCATTGCATCTCTTCTCCCATTTTTCCTTGTGGTCGACGCTAGAATCCCCGGCGTTTACACCGGCGGCGCCTGGCAGAATGCTCATGCCACCTTCTACGGCGGTTCTGACGCTTCCGGCACCATGGGCGGAGCTTGTGGGTATGGGAATTTGTACAGCCAAGGGTATGGAGTCAACACGGCGGCGCTAAGTACGGCTCTGTTCAACAATGGGCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGTGCTAATGACCCAAAATGGTGCCATTCCGGCAGCCCCTCGATCTTGGTTACTGCTACCAATTTCTGCCCGCCGAATTATGCTCTTCCCAACGACAATGGCGGCTGGTGTAACCCTCCTCGGAGCCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATCGCCGAATACCGTGCCGGAATTGTCCCCGTCGCCTACCGCCGAGTGCCATGCCGGAAGCAGGGAGGAATCAGGTTCACGATCAACGGTTTCCGTTACTTCAACCTGGTTTTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGCGGGCTAGCGTTAAAGGATCAAAAACTGAGTGGATGAGCATGACGAGAAACTGGGGGCAAAACTGGCAATCCAACGCCGTGTTGGTGGGCCAGGCTTTGTCGTTTAGAGTGACCGGCAGTGACCGGCGAACCTCAACGTCTTGGAACATCGTGCCCGCCAATTGGCAGTTCGGTCAGACTTTCACCGGAAAAAACTTCCGCGTTTAA 777 54.83 MAAIISLCIASLLPFFLVVDARIPGVYTGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGQSCGACFEIKCANDPKWCHSGSPSILVTATNFCPPNYALPNDNGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRASVKGSKTEWMSMTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPANWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4921039 4922411 + CmoCh02G007970.1 Cmo02g00797 376394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00797 258 Gene3D - 164 256 IPR036749 -
Cmo02g00797 258 PANTHER EXPANSIN-A15 5 257 IPR002963 GO:0009664
Cmo02g00797 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Cmo02g00797 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cmo02g00797 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Cmo02g00797 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Cmo02g00797 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Cmo02g00797 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Cmo02g00797 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Cmo02g00797 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Cmo02g00797 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Cmo02g00797 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Cmo02g00797 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Cmo02g00797 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Cmo02g00797 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Cmo02g00797 258 PANTHER EXPANSIN 5 257 - -
Cmo02g00797 258 SMART dpbb_1 67 154 IPR007112 -
Cmo02g00797 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Cmo02g00797 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Cmo02g00797 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Cmo02g00797 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Cmo02g00797 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Cmo02g00797 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Cmo02g00797 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Cmo02g00797 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Cmo02g00797 258 Gene3D - 19 160 IPR036908 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00797 Cmo13g00120 CCT
Cmo02g00797 Cmo13g00120 ECH
Cmo02g00797 Cmo20g00433 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00797 Cmo-Chr2:4921039 Cmo04g02778 Cmo-Chr4:20041108 1.12E-134 dispersed
Cmo03g01193 Cmo-Chr3:9325015 Cmo02g00797 Cmo-Chr2:4921039 1.64E-94 dispersed
Cmo06g00753 Cmo-Chr6:3913410 Cmo02g00797 Cmo-Chr2:4921039 2.09E-94 dispersed
Cmo15g01247 Cmo-Chr15:8565520 Cmo02g00797 Cmo-Chr2:4921039 3.83E-90 dispersed
Cmo18g01159 Cmo-Chr18:11792230 Cmo02g00797 Cmo-Chr2:4921039 2.96E-110 dispersed
Cmo04g00212 Cmo-Chr4:1058051 Cmo02g00797 Cmo-Chr2:4921039 1.33E-68 transposed
Cmo01g00634 Cmo-Chr1:3246744 Cmo02g00797 Cmo-Chr2:4921039 5.58E-169 wgd
Cmo13g00120 Cmo-Chr13:694183 Cmo02g00797 Cmo-Chr2:4921039 3.30E-155 wgd
Cmo02g00797 Cmo-Chr2:4921039 Cmo20g00433 Cmo-Chr20:2031500 1.06E-180 wgd
Cmo02g00797 Cmo-Chr2:4921039 Cmo03g00435 Cmo-Chr3:4977128 1.52E-169 wgd
Cmo02g00797 Cmo-Chr2:4921039 Cmo04g01251 Cmo-Chr4:6347642 3.75E-141 wgd
Cmo02g00797 Cmo-Chr2:4921039 Cmo04g00211 Cmo-Chr4:1056541 3.34E-95 wgd
Cmo02g00797 Cmo-Chr2:4921039 Cmo07g01042 Cmo-Chr7:5279087 1.76E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00797 - - csv:101203979 506.138