Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00807 ATGGGCCGGGCCTTGCTGTTGAATGGAGCAAGTCCACTCGTTATCGATGAAAGCACTACAAAACAGCCTGAAATATCGGGAATCCATATCTTCATGACACGTATGGCAGAAGGAGAGGATATCCAGCCACTCGTCTGTGACAACGGAACTGGAATGGTTAAGGCTGGCTTTGCTGGAGATGATGCTCCAAGGGCCGTGTTCCCTAGTATAGTAGGTCGACCAAGGCATACTGGTGTGATGGTTGGTATGGGCCAAAAGGATGCGTATGTTGGGGATGAGGCTCAGTCCAAACGAGGTATATTGACTTTGAAATATCCTATAGAGCATGGTATCGTGAGCAATTGGGATGACATGGAAAAAATTTGGCATCATACCTTCTACAATGAACTCCGAGTGGCTCCTGAAGAGCACCCTGTCCTACTCACTGAAGCCCCTCTGAATCCAAAGGCAAATCGTGAAAAAATGACCCAAATCATGTTCGAGACCTTCAACGCTCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCGCTCTATGCTAGTGGACGCACAACTGGTATTGTTATGGATTCTGGTGATGGTGTCAGTCATACTGTCCCAATTTACGAGGGATATGCTCTCCCCCATGCCATTCTTCGTCTCGACCTCGCTGGCCGTGACCTCACTGATGCCCTTATGAAAATCTTGACTGAACGTGGGTACTCCTTCACCACCTCAGCAGAGCGAGAAATTGTGAGAGATGTGAAGGAAAAACTAGCATACATTGCCCTCGATTACGAGCAAGAACTCGAAACTTCCAAAACTGGTTCATCTGTTGAGAAGAGTTATGAACTTCCAGATGGGCAGATTATCACAATCGGTGCAGAACGTTTCCGATGCCCTGAAGTTCTTTTCCAGCCTTCAATGATTGGAATGGAAGCTGCAGGCATCCACGAAACAACCTATAACTCCATCATGAAATGCGACGTTGATATCAGAAAGGATCTGTATGGAAACATTGTTCTTAGTGGAGGAACAACCATGTTCCCTGGCATCGCTGATCGAATGAGCAAAGAAATAACTGCATTAGCCCCAAGCAGCATGAAAATTAAAGTGGTAGCTCCTCCTGAAAGGAAGTACAGTGTCTGGATTGGTGGCTCCATTCTAGCCTCACTCAGCACGTTTCAGCAGATGTGGATTGCAAAGGCTGAGTATGATGAGTCTGGCCCATCCATCGTGCACAGGAAATGCTTCTGA 1236 46.93 MGRALLLNGASPLVIDESTTKQPEISGIHIFMTRMAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETSKTGSSVEKSYELPDGQIITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4963969 4966374 - CmoCh02G008070.1 Cmo02g00807 376404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00807 411 SUPERFAMILY Actin-like ATPase domain 183 411 IPR043129 -
Cmo02g00807 411 PRINTS Actin signature 176 195 IPR004000 -
Cmo02g00807 411 PRINTS Actin signature 97 119 IPR004000 -
Cmo02g00807 411 PRINTS Actin signature 62 71 IPR004000 -
Cmo02g00807 411 PRINTS Actin signature 85 96 IPR004000 -
Cmo02g00807 411 PRINTS Actin signature 151 164 IPR004000 -
Cmo02g00807 411 PRINTS Actin signature 272 288 IPR004000 -
Cmo02g00807 411 PANTHER ACTIN 3 35 410 - -
Cmo02g00807 411 CDD NBD_sugar-kinase_HSP70_actin 44 217 - -
Cmo02g00807 411 Gene3D - 44 405 - -
Cmo02g00807 411 SMART actin_3 41 411 IPR004000 -
Cmo02g00807 411 Pfam Actin 39 411 IPR004000 -
Cmo02g00807 411 Gene3D - 174 374 - -
Cmo02g00807 411 ProSitePatterns Actins signature 1. 89 99 IPR004001 -
Cmo02g00807 411 PANTHER ACTIN 35 410 IPR004000 -
Cmo02g00807 411 ProSitePatterns Actins signature 2. 392 400 IPR004001 -
Cmo02g00807 411 SUPERFAMILY Actin-like ATPase domain 40 188 IPR043129 -
Cmo02g00807 411 Gene3D Actin; Chain A, domain 4 216 307 - -
Cmo02g00807 411 ProSitePatterns Actins and actin-related proteins signature. 140 152 IPR020902 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00807 Cmo20g00447 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00807 Cmo-Chr2:4963969 Cmo14g00419 Cmo-Chr14:1994092 0 dispersed
Cmo04g01248 Cmo-Chr4:6331020 Cmo02g00807 Cmo-Chr2:4963969 2.68E-17 dispersed
Cmo11g01508 Cmo-Chr11:10693121 Cmo02g00807 Cmo-Chr2:4963969 0 dispersed
Cmo19g00310 Cmo-Chr19:2317534 Cmo02g00807 Cmo-Chr2:4963969 0 dispersed
Cmo02g00807 Cmo-Chr2:4963969 Cmo20g00447 Cmo-Chr20:2077075 0 wgd
Cmo02g00807 Cmo-Chr2:4963969 Cmo03g00438 Cmo-Chr3:4997804 0 wgd
Cmo02g00807 Cmo-Chr2:4963969 Cmo07g01037 Cmo-Chr7:5240682 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00807 K10355 - han:110894935 750.74