Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00840 ATGCCGCAGAAGGGAATGAGGACTGTGTTCTTCAAATCTCCACCTTCTTCTTCTTCTTCTTCTATACCGGGCACGCCGTCGTCGTCTCACTCGTCTCGCCCCACTTTGTCGGATTCTATGGTGGAGGAGACAATCGAAGTTGCAGAGTCGTTTGTGGCGAGGTGGAGACCTGATCTTGTCGCTGCTGGTTCTTTGTTTCAAGGGGATGACCGCGAGGAAGCTCGGCAGTTTATTAAGGCGGTTAAGAATTTACATGCTGCCATGCACTGCCTTGCTTCTCGGCATTCGTCATCGGAGAGGCTTGTGCGTGCACACGATTTGATGAGGGTCGGCATGGAGAGGCTTCAGAAAGAGTTTTACCGGATTTTGTCTGTGAATCGGGAGTATTTGTATCCGGATTCGGTTTCCAGCGTCCAATCGCCGATGACGGTTTCGGCTAGGTCCAGTGTTTCTGATTTTGAAGTGGAATTGGAAGATGAGTTCCGGTTTGCTAACGAATCAATTACTGAGGTCGAGCGAGTTTCGATGTCGGCCATGGCGGATTTGAAAGCAATTGCGGATTGCATGATCTCCACTGGCTATGGCAAAGAATGCGTCAAGATTTATAAAACTGTGAGGAAATCGATTATTGACGAGGGTCTCTACAACCTAGGGATTGAGAAATTGAGTTTGTCGAAAGTTCAGAAGATGGATTGGGAGGTTCTGGAGATCAAAATCAAAATCTGGTTGAGAGGTGTGAAAACCGCTGTGAAATCTTTGTTCGAAGGAGAGAGAATCCTTTGCGATCACGTTTTCTCGGCTTCTGTTCCCATTAGAGAATCGTGCTTCGCTCAAATTTCCAAGGACGGTGCGATGATTCTGTTTGAATTCCCAGAATTAGCTGCAAAATACAAAAAAACTCCCGAGAAAATTTTCATTACCCTAGACCTTTACGAAGCCATAGCCGACCTCTGGCCCGAGATCAATTATATTTTCTCATCCACAGCAACATCAATGGTACAGTCACAAGCCGTCAATTCACTGATCAAACTCGGACAGAATATTGGAACATTAATCGCCGACTTCGAAATGGCTATTCAGAAAGAATCATCGAAAACGCCTGTTCCAAAAGGCGGAGTTCATCCACTCACTCGCTACGTGATGAACTACATTTCGTTCCTCTCCGATTACAGTGGAATACTCAACGACATTGTGGCCGATTCGCCTCTACCAACACAATTATCAATGCCAGAATCATACTACGGAACGCCAAAACAAGATGATAATCCGATTACCTTACATTTCGCGTGGTTGATCCTCGTCCTCCTCTGCAAACTCGACGGCAAAGCAGAGCATTACAACGACGTCGCTCTCTCGTACTTGTTCCTGGCGAACAATCTCCGGTACATCGTCGACAAAGTCCGCAACTCAAATCTCAGATTCCTCCTCGGCGACGAGTGGATTGAGAGGCACGAATCGAAGATCAAACTCTACTCCTCCAAGTACATGCGCATTGGATGGAGCGGAGTCTTCTCATCGCTACCGACGGACGTTGTAGCAGAGATCTCGCCGGAGGATGCAAGAGAATCATTCAGAAATTTCAACAGAGCTTTTGAAGAAACTTACAGAAAACAGACCTCCTGGATCGTCCCCAATCAAAAGCTTCGCGATGAATTAAAAATCTCCTTGGCGAAGGAACTCGGGGCTTTATATGGCGAGTTTTACGCGAGGAATCGGGGTCGTGCGAGGCGAGTTTCCGGGTCGGATCCAGTTGTCAGACTTTCCCCTGATGATTTGGGTAATTACTTATCGGATCTTTTTTACGGATCCGGATCCGAAAGTGTAGGGAGCGCGTCCTCGAACTATTCATCGTCCCATTCCTCGCCGTGTTCTCGAGGGAGATTTGTCCGTTGA 1893 47.28 MPQKGMRTVFFKSPPSSSSSSIPGTPSSSHSSRPTLSDSMVEETIEVAESFVARWRPDLVAAGSLFQGDDREEARQFIKAVKNLHAAMHCLASRHSSSERLVRAHDLMRVGMERLQKEFYRILSVNREYLYPDSVSSVQSPMTVSARSSVSDFEVELEDEFRFANESITEVERVSMSAMADLKAIADCMISTGYGKECVKIYKTVRKSIIDEGLYNLGIEKLSLSKVQKMDWEVLEIKIKIWLRGVKTAVKSLFEGERILCDHVFSASVPIRESCFAQISKDGAMILFEFPELAAKYKKTPEKIFITLDLYEAIADLWPEINYIFSSTATSMVQSQAVNSLIKLGQNIGTLIADFEMAIQKESSKTPVPKGGVHPLTRYVMNYISFLSDYSGILNDIVADSPLPTQLSMPESYYGTPKQDDNPITLHFAWLILVLLCKLDGKAEHYNDVALSYLFLANNLRYIVDKVRNSNLRFLLGDEWIERHESKIKLYSSKYMRIGWSGVFSSLPTDVVAEISPEDARESFRNFNRAFEETYRKQTSWIVPNQKLRDELKISLAKELGALYGEFYARNRGRARRVSGSDPVVRLSPDDLGNYLSDLFYGSGSESVGSASSNYSSSHSSPCSRGRFVR 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5099790 5101682 + CmoCh02G008400.1 Cmo02g00840 376437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00840 630 Pfam Exo70 exocyst complex subunit 242 598 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cmo02g00840 630 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 6 607 - -
Cmo02g00840 630 SUPERFAMILY Cullin repeat-like 64 600 IPR016159 -
Cmo02g00840 630 MobiDBLite consensus disorder prediction 608 624 - -
Cmo02g00840 630 MobiDBLite consensus disorder prediction 10 39 - -
Cmo02g00840 630 Gene3D Exocyst complex component Exo70 61 608 - -
Cmo02g00840 630 PANTHER EXOCYST COMPLEX PROTEIN EXO70 6 607 IPR004140 GO:0000145|GO:0006887
Cmo02g00840 630 MobiDBLite consensus disorder prediction 1 39 - -
Cmo02g00840 630 MobiDBLite consensus disorder prediction 608 630 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00840 Cmo20g00472 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00589 Cmo-Chr1:2986280 Cmo02g00840 Cmo-Chr2:5099790 0 dispersed
Cmo02g00840 Cmo-Chr2:5099790 Cmo13g00162 Cmo-Chr13:1042791 0 dispersed
Cmo14g00163 Cmo-Chr14:726507 Cmo02g00840 Cmo-Chr2:5099790 0 wgd
Cmo02g00840 Cmo-Chr2:5099790 Cmo20g00472 Cmo-Chr20:2180937 0 wgd
Cmo02g00840 Cmo-Chr2:5099790 Cmo04g01289 Cmo-Chr4:6535475 4.15E-173 wgd
Cmo02g00840 Cmo-Chr2:5099790 Cmo07g01009 Cmo-Chr7:4983705 1.21E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00840 K07195 - csv:101212978 1021.15