Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00853 ATGGAGCCGTTGGAAAAACCGGTGCCGAAGTCGTCGCCTCTCGCGCCATTTCCTCGGGACTCGAGAGGATCGCTCGAGGTTTTTAATCCCTCCGCCACTTATACGTCGCGATCCATCAATTCCATTTCACGGCCGAACTCGACCTGGTCCAATTGGGTGGAGCCACGTAGCAGTGCGGAGTCGGACTCCACTAGACTCGCCGCCGTTCCGACCAGTAAGACCGGCGAGGATATCACGTCGTGGATGGCCTTCAAGGATTCGAATGCTTCACCACAATCCAACTCGCCACAAGCTCAGAAGACTATCTCGGCGATTCTCAGCGACAAATCGCCGCCGAAATCAGCGGGCGAAGTAGACTCTGCCACCTTACGTGCTGCCGAGTGGGGATTGGTACTGAAAACCGATACGGAAACTGGAAAACCGCAGGGCGTTGGAGTTCGAACTTCCGGCGGCGATGAACCGATTAACAAACTGGAGAATTCGAGAAGAACTTCGAATAACTCGGGGCGGAGTTCGGGCGACATGTCGGACGATGTGGGAAGAGAAAGAGGGTTTCCGAGAGTCTCTGAGGATTTGAAAGACGCTCTGTCGACATTTCAGCAAACATTTGTGGTTTCTGATGCTACGAAACCTGATTATCCGATTATGTACGCCAGTGCTGGATTCTTCAAGATGACTGGCTATACATCCAAGGAAGTTATCGGAAGAAATTGTCGATTTTTGCAGGGTGCAGATACAGACCCAGAAGATGTGGCCAAGATTCGAGAGGCTTTACAAGCTGGGACAAGTTACTGTGGGAGGTTGTTGAATTACAAGAAAGATGGGACCCCGTTTTGGAATTTGCTTACTATTTCACCTATCAAAGATGATGACGGCAAGGTTCTCAAATTCATTGGAATGCAAGTAGAGGTGAGCAAACACACAGAGGGATTCAAAGATAAGATGGTTCGTCCTAATGGCTTGCCAGAATCGTTGATTCGTTATGATGCCCGTCAAAAGGATATGGCTACCAGTTCGGTAACGGAGCTTGTGCAGGCGGTGAAAATGCCTGGGTCTGTGTCTGTAAGTGAATCTAGGCCACGGGCTCTAAGTGAATCTATGAACCGCCGGTCAGTAAGAAAATCCGGCGGCGGTGGCGGCGGAGGCGACGGCGGAGATGAGACATATAGACTTGAAGCTGCTATGGTTAGGCGAAAGTCAGAGAGTGCAGCAGCTTCAACTGGACGACGTAGAAGGTCGATGGAGCGTATCAATGAGCTGCCGGAGACGAAACCCAAAATGTATAGCCGTCGTTCATTTATAGGGTTTGTGAGGAAAAGTCAATCAAATTCTGAAAGCTTCAACATTGAAAATTGTTCGGAGGATGATAACGAGAGCGATGATGATGATGAGAGACCAGATAGTGTAGACGACAAAGTAAGACAAAAGGAAATGAGGAAGGGTATTGATTTAGCGACCACCCTCGAACGTATAGAGAAAAACTTCGTCATCACTGATCCGAGACTCCCCGACAATCCCATTATATTTGCTTCTGATAGCTTCCTGGAGCTGACTGAGTACAGTAGAGAGGAAATCTTGGGAAGAAATTGCAGGTTCCTGCAAGGTCCTGAAACCGATCGAGCAACTGTCAAGAAAATAAGAGATGCAATTGACAACCAAACTGAAGTTACAGTGCAGCTTATTAACTACACCAAAACTGGTAAGAAGTTTTGGAATCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGGGAAGTCCAGTATTTTATTGGAGTACAACTTGACGGGAGTCAGCACGTCGAACCGCTAAGCAATTGCATATCGGAAACTACTGCAAAAGAGGGCGAAAAATTGGTAAAAGAAACTGCTGAAAATATTGATACGGCGGCTAGAGAACTTCCCGATGCCAATTTGACACCAGAAGATTTATGGGCAAATCATTCTAAAGTGGTCAAACCAAAACCTCACAGAAAGGATAGTGCTTCTTGGAAAGCTTTCCAGAAGATTTTAGACAGTGGAGAACAGATAGGACTGAAACATTTCAAGCCGGTTAAACCTTTGGGATCAGGTGATACTGGCAGTGTGCATTTAGTAGAACTGTGTGGGACTGATCAGTATTTTGCCATGAAGGCAATGGACAAGGGTGTTATGCTTAACCGCAACAAGGTGCATAGAGCTTGCGCCGAGAGGGAAATACTCGACAAGTTGGATCATCCTTTTCTTCCTGCGTTATATGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTCTGCTTTTGGAGAGACAACCTAGAAAGGTTTTAAAGGAAGATGCTATAAGGTTTTATGCTGCTGAAGTTCTCATTGCATTAGAGTATCTTCATTGTCAAGGGATAATTTACAGAGATCTGAAGCCTGAGAATGTTCTACTCCGGGGAGACGGACACGTGACGTTGACGGATTTTGACTTGTCATGTTTGACTGCTTCCAAACCTCAGCTTTTGTTTCCAACGACGAATGAGAAGAAAAAACGCTCAAGATCTCAACAGACTCCGATCTTTATAGCTGAACCTATGCGAGCATCGAACTCATTCGTCGGCACTGAAGAGTACATAGCACCGGAAATCATCACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTGTCCTCCTATATGAGATGCTCTATGGATACACACCCTTTAGGGGGAAGACGAGGCAAAAGACTTTTGCCAACGTTCTTCATAAGGATCTTAAATTTCCCAAAAGTATATCGGCAAGTCTCAATGCAAAGCAATTAATCTTCAGATTATTGCAAAGAGATCCCAAAACTCGATTGGGTTCTCAACAAGGAGCTAATGAAATCAAACGACATCCGTTCTTCCGAGGCATCAATTGGGCGCTCGTTCGCTGCATGAAACCTCCCGAGCTCGAAGCGCCTCTCTTCCCGACCACCGATGCCGAAAAAGAAGGTAATAAGGCATCAGATTTTGATGGAAAAGATGTTGAACTCAGTGTTTTCTGA 3045 46.34 MEPLEKPVPKSSPLAPFPRDSRGSLEVFNPSATYTSRSINSISRPNSTWSNWVEPRSSAESDSTRLAAVPTSKTGEDITSWMAFKDSNASPQSNSPQAQKTISAILSDKSPPKSAGEVDSATLRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPINKLENSRRTSNNSGRSSGDMSDDVGRERGFPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKDMATSSVTELVQAVKMPGSVSVSESRPRALSESMNRRSVRKSGGGGGGGDGGDETYRLEAAMVRRKSESAAASTGRRRRSMERINELPETKPKMYSRRSFIGFVRKSQSNSESFNIENCSEDDNESDDDDERPDSVDDKVRQKEMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCISETTAKEGEKLVKETAENIDTAARELPDANLTPEDLWANHSKVVKPKPHRKDSASWKAFQKILDSGEQIGLKHFKPVKPLGSGDTGSVHLVELCGTDQYFAMKAMDKGVMLNRNKVHRACAEREILDKLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLERQPRKVLKEDAIRFYAAEVLIALEYLHCQGIIYRDLKPENVLLRGDGHVTLTDFDLSCLTASKPQLLFPTTNEKKKRSRSQQTPIFIAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGVLLYEMLYGYTPFRGKTRQKTFANVLHKDLKFPKSISASLNAKQLIFRLLQRDPKTRLGSQQGANEIKRHPFFRGINWALVRCMKPPELEAPLFPTTDAEKEGNKASDFDGKDVELSVF 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5187055 5196986 - CmoCh02G008530.1 Cmo02g00853 376450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00853 1014 ProSiteProfiles PAS repeat profile. 484 553 IPR000014 -
Cmo02g00853 1014 ProSiteProfiles PAS repeat profile. 188 259 IPR000014 -
Cmo02g00853 1014 MobiDBLite consensus disorder prediction 351 424 - -
Cmo02g00853 1014 MobiDBLite consensus disorder prediction 160 174 - -
Cmo02g00853 1014 Gene3D Transferase(Phosphotransferase) domain 1 765 991 - -
Cmo02g00853 1014 SMART serkin_6 681 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00853 1014 CDD STKc_phototropin_like 679 987 - -
Cmo02g00853 1014 SUPERFAMILY Protein kinase-like (PK-like) 662 989 IPR011009 -
Cmo02g00853 1014 Gene3D PAS domain 202 356 - -
Cmo02g00853 1014 Gene3D Phosphorylase Kinase; domain 1 680 993 - -
Cmo02g00853 1014 Pfam PAS domain 503 595 IPR000014 -
Cmo02g00853 1014 Pfam PAS domain 209 305 IPR000014 -
Cmo02g00853 1014 MobiDBLite consensus disorder prediction 26 108 - -
Cmo02g00853 1014 MobiDBLite consensus disorder prediction 451 466 - -
Cmo02g00853 1014 ProSiteProfiles PAC domain profile. 554 608 IPR000700 -
Cmo02g00853 1014 TIGRFAM sensory_box: PAS domain S-box protein 505 595 IPR000014 -
Cmo02g00853 1014 TIGRFAM sensory_box: PAS domain S-box protein 215 307 IPR000014 -
Cmo02g00853 1014 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
Cmo02g00853 1014 SMART pas_2 190 259 IPR000014 -
Cmo02g00853 1014 SMART pas_2 482 551 IPR000014 -
Cmo02g00853 1014 SUPERFAMILY PYP-like sensor domain (PAS domain) 209 301 IPR035965 -
Cmo02g00853 1014 PANTHER PHOTOTROPIN-1 136 1014 - -
Cmo02g00853 1014 Gene3D PAS domain 468 633 - -
Cmo02g00853 1014 SMART pac_2 265 307 IPR001610 -
Cmo02g00853 1014 SMART pac_2 557 599 IPR001610 -
Cmo02g00853 1014 CDD PAS 495 595 IPR000014 -
Cmo02g00853 1014 CDD PAS 215 304 IPR000014 -
Cmo02g00853 1014 SUPERFAMILY PYP-like sensor domain (PAS domain) 496 595 IPR035965 -
Cmo02g00853 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Cmo02g00853 1014 ProSiteProfiles Protein kinase domain profile. 681 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00853 1014 MobiDBLite consensus disorder prediction 390 424 - -
Cmo02g00853 1014 ProSiteProfiles PAC domain profile. 262 316 IPR000700 -
Cmo02g00853 1014 MobiDBLite consensus disorder prediction 445 476 - -
Cmo02g00853 1014 Pfam Protein kinase domain 683 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00853 1014 MobiDBLite consensus disorder prediction 1 119 - -
Cmo02g00853 1014 PANTHER FLIPPASE KINASE 1-RELATED 136 1014 - -
Cmo02g00853 1014 MobiDBLite consensus disorder prediction 133 183 - -
Cmo02g00853 1014 MobiDBLite consensus disorder prediction 988 1014 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00853 Cmo20g00487 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00304 Cmo-Chr2:1529636 Cmo02g00853 Cmo-Chr2:5187055 0 dispersed
Cmo02g00853 Cmo-Chr2:5187055 Cmo20g00685 Cmo-Chr20:3370425 0 dispersed
Cmo12g00895 Cmo-Chr12:8203539 Cmo02g00853 Cmo-Chr2:5187055 1.89E-15 dispersed
Cmo02g00853 Cmo-Chr2:5187055 Cmo20g00487 Cmo-Chr20:2272338 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74117 PF00069 Pkinase 1.10E-63 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00853 K20715 - csv:101214662 1722.21