Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00859 | ATGTTTGATCTTAATCTCAATGTCGACTCGGTTGATGCGACTCAGAAGGAGGACTCCGTCGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCATGTGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGACGACTCGTGCTCCACACGCGCTGGTGGCGAGCTCTTCACGCTCAACTTCGAAATATTGAAGGCTGGAAGCACGAACGATATGGTCACTAAGGAATTTTTTCCGTTAGGTGGAGCGGTGAGTGCTGAATTCGGGATTCCTCAGGGGCATAAATCGGCCTCTTCTTCGTCATCTTCATCGAGGAAGAACTGGATCGACCTTGCGTGCAATCGAAGCAGTTCAGCAGGGGAGGGGAGAACGGTTCAACCAGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGAGGTCCAAGGTCTCGGAGTTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGCGGGAAGCAAGTCTATCTCGGTGGATTCGACACGGCACACTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGGGGGGTAGACGCTGATATTAATTTCAATGTCAGCGATTATGAGGAAGACCTGAAACTGATGGAGAACTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGCACTGGTTTCTCAAGGGGGAGCTCAAAATATAGAGGCGTAACATTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGGCTTATGACAAGGCCGCAATCAAATGTAATGGGCGGGAGGCAGTAACCAACTTTGAGCCTAGCACATACGAAGGAGAGGGAGTTTCTGAGGGCAGCAGTGAAGGTGGTCGGAGTATGCTTGATTTAAATTTAGGGATTTCACCCCCCTCCAACTGTCAAAAGGATGATAATGGGCATCTGCGATTCCAATCTGGTCCTTGCTTTCCTAATGATCGGAGCACAATGGTAAACACTAAACAAAGAATTCGTGAAACATTCCAGTTTCTATTTAGTAATGAAAGTTCCCAAAAATGA | 1110 | 48.83 | MFDLNLNVDSVDATQKEDSVVFFEKLPQGSGNHVDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTLNFEILKAGSTNDMVTKEFFPLGGAVSAEFGIPQGHKSASSSSSSSRKNWIDLACNRSSSAGEGRTVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNVSDYEEDLKLMENLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKAYDKAAIKCNGREAVTNFEPSTYEGEGVSEGSSEGGRSMLDLNLGISPPSNCQKDDNGHLRFQSGPCFPNDRSTMVNTKQRIRETFQFLFSNESSQK | 369 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5223165 | 5225582 | - | CmoCh02G008590.1 | Cmo02g00859 | 376456 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00859 | 369 | MobiDBLite | consensus disorder prediction | 32 | 58 | - | - | |
Cmo02g00859 | 369 | ProSiteProfiles | AP2/ERF domain profile. | 157 | 213 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00859 | 369 | Gene3D | AP2/ERF domain | 156 | 215 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo02g00859 | 369 | Gene3D | AP2/ERF domain | 248 | 292 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo02g00859 | 369 | MobiDBLite | consensus disorder prediction | 128 | 142 | - | - | |
Cmo02g00859 | 369 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 | 1 | 335 | - | - | |
Cmo02g00859 | 369 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 335 | - | - | |
Cmo02g00859 | 369 | CDD | AP2 | 157 | 215 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00859 | 369 | Pfam | AP2 domain | 157 | 205 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00859 | 369 | SMART | rav1_2 | 249 | 297 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00859 | 369 | SMART | rav1_2 | 157 | 219 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00859 | 369 | SUPERFAMILY | DNA-binding domain | 156 | 215 | IPR016177 | GO:0003677 | |
Cmo02g00859 | 369 | CDD | AP2 | 248 | 293 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g00859 | 369 | MobiDBLite | consensus disorder prediction | 128 | 158 | - | - | |
Cmo02g00859 | 369 | MobiDBLite | consensus disorder prediction | 27 | 59 | - | - | |
Cmo02g00859 | 369 | SUPERFAMILY | DNA-binding domain | 248 | 292 | IPR016177 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00859 | Cmo-Chr2:5223165 | Cmo20g00493 | Cmo-Chr20:2325892 | 0 | dispersed | |
Cmo14g00175 | Cmo-Chr14:787506 | Cmo02g00859 | Cmo-Chr2:5223165 | 2.81E-95 | wgd | |
Cmo02g00859 | Cmo-Chr2:5223165 | Cmo04g01310 | Cmo-Chr4:6668332 | 5.08E-41 | wgd | |
Cmo02g00859 | Cmo-Chr2:5223165 | Cmo04g00269 | Cmo-Chr4:1358706 | 7.31E-56 | wgd | |
Cmo02g00859 | Cmo-Chr2:5223165 | Cmo06g00342 | Cmo-Chr6:1658640 | 2.78E-88 | wgd | |
Cmo02g00859 | Cmo-Chr2:5223165 | Cmo07g00986 | Cmo-Chr7:4842641 | 5.53E-97 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9256 | PF00847 | AP2 | 2.90E-10 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00859 | K09284 | - | csv:101222024 | 587.8 |