Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00859 ATGTTTGATCTTAATCTCAATGTCGACTCGGTTGATGCGACTCAGAAGGAGGACTCCGTCGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCATGTGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGACGACTCGTGCTCCACACGCGCTGGTGGCGAGCTCTTCACGCTCAACTTCGAAATATTGAAGGCTGGAAGCACGAACGATATGGTCACTAAGGAATTTTTTCCGTTAGGTGGAGCGGTGAGTGCTGAATTCGGGATTCCTCAGGGGCATAAATCGGCCTCTTCTTCGTCATCTTCATCGAGGAAGAACTGGATCGACCTTGCGTGCAATCGAAGCAGTTCAGCAGGGGAGGGGAGAACGGTTCAACCAGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGAGGTCCAAGGTCTCGGAGTTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGCGGGAAGCAAGTCTATCTCGGTGGATTCGACACGGCACACTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGGGGGGTAGACGCTGATATTAATTTCAATGTCAGCGATTATGAGGAAGACCTGAAACTGATGGAGAACTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGCACTGGTTTCTCAAGGGGGAGCTCAAAATATAGAGGCGTAACATTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGGCTTATGACAAGGCCGCAATCAAATGTAATGGGCGGGAGGCAGTAACCAACTTTGAGCCTAGCACATACGAAGGAGAGGGAGTTTCTGAGGGCAGCAGTGAAGGTGGTCGGAGTATGCTTGATTTAAATTTAGGGATTTCACCCCCCTCCAACTGTCAAAAGGATGATAATGGGCATCTGCGATTCCAATCTGGTCCTTGCTTTCCTAATGATCGGAGCACAATGGTAAACACTAAACAAAGAATTCGTGAAACATTCCAGTTTCTATTTAGTAATGAAAGTTCCCAAAAATGA 1110 48.83 MFDLNLNVDSVDATQKEDSVVFFEKLPQGSGNHVDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTLNFEILKAGSTNDMVTKEFFPLGGAVSAEFGIPQGHKSASSSSSSSRKNWIDLACNRSSSAGEGRTVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNVSDYEEDLKLMENLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKAYDKAAIKCNGREAVTNFEPSTYEGEGVSEGSSEGGRSMLDLNLGISPPSNCQKDDNGHLRFQSGPCFPNDRSTMVNTKQRIRETFQFLFSNESSQK 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5223165 5225582 - CmoCh02G008590.1 Cmo02g00859 376456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00859 369 MobiDBLite consensus disorder prediction 32 58 - -
Cmo02g00859 369 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Cmo02g00859 369 Gene3D AP2/ERF domain 156 215 IPR036955 GO:0003700|GO:0006355
Cmo02g00859 369 Gene3D AP2/ERF domain 248 292 IPR036955 GO:0003700|GO:0006355
Cmo02g00859 369 MobiDBLite consensus disorder prediction 128 142 - -
Cmo02g00859 369 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 335 - -
Cmo02g00859 369 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 335 - -
Cmo02g00859 369 CDD AP2 157 215 IPR001471 GO:0003700|GO:0006355
Cmo02g00859 369 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Cmo02g00859 369 SMART rav1_2 249 297 IPR001471 GO:0003700|GO:0006355
Cmo02g00859 369 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Cmo02g00859 369 SUPERFAMILY DNA-binding domain 156 215 IPR016177 GO:0003677
Cmo02g00859 369 CDD AP2 248 293 IPR001471 GO:0003700|GO:0006355
Cmo02g00859 369 MobiDBLite consensus disorder prediction 128 158 - -
Cmo02g00859 369 MobiDBLite consensus disorder prediction 27 59 - -
Cmo02g00859 369 SUPERFAMILY DNA-binding domain 248 292 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00859 Cmo-Chr2:5223165 Cmo20g00493 Cmo-Chr20:2325892 0 dispersed
Cmo14g00175 Cmo-Chr14:787506 Cmo02g00859 Cmo-Chr2:5223165 2.81E-95 wgd
Cmo02g00859 Cmo-Chr2:5223165 Cmo04g01310 Cmo-Chr4:6668332 5.08E-41 wgd
Cmo02g00859 Cmo-Chr2:5223165 Cmo04g00269 Cmo-Chr4:1358706 7.31E-56 wgd
Cmo02g00859 Cmo-Chr2:5223165 Cmo06g00342 Cmo-Chr6:1658640 2.78E-88 wgd
Cmo02g00859 Cmo-Chr2:5223165 Cmo07g00986 Cmo-Chr7:4842641 5.53E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9256 PF00847 AP2 2.90E-10 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00859 K09284 - csv:101222024 587.8