Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00870 ATGGAAGGAAGTGATTCAATCACCACTGTTTCGTCTACTCCACTATCTCAATCTCCTTCTTCTTCTTCTTCTCCCGCTTCACCGCCGCCTCTCGTTCTCAGTCCTTGTGCGGCCTGCAAGATTTTGAGGCGGCGATGTGCCGGACGATGTGTATTGGCGCCCTATTTCCCTCCAACTGAGCCAGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCGAGTAATATCATTAAATGTTTGCAGGAACTGCCTGAATCACAAAGGGCCGATGCAGTGAGCAGCATGGTTTATGAAGCAAATGCGAGGATCAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTCCAAAAGCAAGTCAATGATCTTCAAGCGCAGCTAGCCAAGGCTCAGGCTGAGCTTGTCAACATGGAATGCCAACAAGCCAATCTGGTGGCCTTCGTTTGCAGGGAATTAGCTCAGTCTCACCCCCAGTGTTTTGATGATTTCAATGCCAGCCCTCACAGCGGCTTCCATAGCATCACCCAAACCAACTTCGATGATTATAGCAATGTAAACCAACTATGGGAACCTCTCTGGACATGA 588 49.66 MEGSDSITTVSSTPLSQSPSSSSSPASPPPLVLSPCAACKILRRRCAGRCVLAPYFPPTEPAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQVNDLQAQLAKAQAELVNMECQQANLVAFVCRELAQSHPQCFDDFNASPHSGFHSITQTNFDDYSNVNQLWEPLWT 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5297039 5298503 + CmoCh02G008700.1 Cmo02g00870 376467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00870 195 MobiDBLite consensus disorder prediction 1 30 - -
Cmo02g00870 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 11 192 - -
Cmo02g00870 195 MobiDBLite consensus disorder prediction 1 22 - -
Cmo02g00870 195 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Cmo02g00870 195 Coils Coil 114 141 - -
Cmo02g00870 195 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Cmo02g00870 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00870 Cmo-Chr2:5297039 Cmo15g00444 Cmo-Chr15:2017329 4.31E-55 dispersed
Cmo01g00564 Cmo-Chr1:2827611 Cmo02g00870 Cmo-Chr2:5297039 1.03E-73 wgd
Cmo01g00564 Cmo-Chr1:2827611 Cmo02g00870 Cmo-Chr2:5297039 1.03E-73 wgd
Cmo13g00196 Cmo-Chr13:1406230 Cmo02g00870 Cmo-Chr2:5297039 3.62E-73 wgd
Cmo02g00870 Cmo-Chr2:5297039 Cmo20g00502 Cmo-Chr20:2396456 1.85E-100 wgd
Cmo02g00870 Cmo-Chr2:5297039 Cmo04g01315 Cmo-Chr4:6708105 2.04E-73 wgd
Cmo02g00870 Cmo-Chr2:5297039 Cmo04g00277 Cmo-Chr4:1399587 1.04E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9258 PF03195 LOB 3.40E-40 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00870 - - csv:101215067 278.87