Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00876 ATGAAATTCCATATTTCATCTGCAATTTTGTCTTTCTTGTTAATTTCTCTTATCGTTCTAAACACAGCTTCTCTCTGCAAATCTGAAGTTATAACCCTAACCGCGGACACCTTCTCCGACAAGGTAAAGGAAAAAGATACCGCATGGTTTGTGAAGTTCTGTGTTCCTTGGTGCAAGCATTGCAAGAATTTAGGATCATTATGGGAGGACCTGGGCAAGACAATGGAAGGCGAGGATGAAATCGAGGTCGGAGAAGTTGATTGTGGTTCTCATAAATCAGTCTGTTCTAAAGTTGATATCCATTCATATCCTACATTCAAGCTTTTCTATGAAGGGGAAGAAGTTGCAAAGTATAAAGTTTACAAATTTAAAATGGGGAAAGAGAAGGTTCACATTAACATTGTGGTCATTGGCCACGTCGATTCCGGGAAGTCCACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTCATTGAAAGATTCGAGAAGGAGGCTGCTGAGATGAACAAGAGGTCCTTCAAGTATGCCTGGGTCTTGGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATCACCATCGATATTGCCTTGTGGAAGTTTGAGACCACCAAATACTACTGCACCGTTATTGATGCTCCTGGACATCGTGATTTCATTAAGAACATGATTACTGGTACCTCACAGGCCGATTGTGCTGTTCTCATTATTGACTCCACCACTGGTGGTTTTGAAGCGGGTATTTCCAAGGATGGTCAAACCCGTGAGCATGCTTTGCTTGCGTTTACCCTTGGTGTTAAGCAGATGATCTGCTGCTGCAACAAGATGGATGCCACCACTCCCAAGTACTCGAAGGCAAGATATGATGAAATTGTCAAGGAAGTTTCTTCTTACCTCAAGAAGGTGGGCTACAACCCTGATAAAATCCCATTCGTCCCCATCTCTGGTTTTGAAGGAGACAACATGATTGAGAGGTCAACCAACCTCGATTGGTACAAGGGCCCAACCCTTCTTGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCTTCAGACAAGCCACTCCGTCTTCCACTTCAGGACGTTTACAAGATTGGTGGTATTGGAACTGTCCCAGTTGGACGAGTTGAGACCGGTGTACTCAAGCCAGGAATGGTCGTCTGTTTTGGCCCTACTGGATTGACAACTGAAGTTAAGTCTGTTGAGATGCACCATGAAGCTCTCCCAGAGGCCGTTCCAGGTGACAATGTTGGATTCAACGTGAAGAATGTTGCTGTCAAGGATCTTAAGCGTGGTTTCGTTGCCTCCAATTCCAAGGATGACCCTGCCAGGGAGGCTGCCAACTTCACTTCTCAAGTCATCATCATGAACCACCCAGGACAGATTGGCAATGGCTATGCTCCAGTGCTTGATTGCCACACCTCTCACATTGCCGTGAAGTTTTCTGAGATTCTAACCAAGATTGACAGGCGATCTGGTAAGGAACTTGAGAAGGAGCCCAAGTTCTTGAAGAACGGTGATGCTGGTATGATCAAGATGGTTCCCACCAAGCCGATGGTGGTGGAAACATTCTCTTCATACCCTCCTCTTGGACGATTTGCCGTGAGGGACATGAGACAGACGGTTGCTGTCGGTGTCATCAAGTCGGTTGAGAAGAAGGATCCAAGTGGTGCCAAGGTTACCAAATCCGCAGCCAAGAAGGCTGGAAAGTGA 1722 46.46 MKFHISSAILSFLLISLIVLNTASLCKSEVITLTADTFSDKVKEKDTAWFVKFCVPWCKHCKNLGSLWEDLGKTMEGEDEIEVGEVDCGSHKSVCSKVDIHSYPTFKLFYEGEEVAKYKVYKFKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVCFGPTGLTTEVKSVEMHHEALPEAVPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGMIKMVPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKAGK 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5316708 5322965 + CmoCh02G008760.1 Cmo02g00876 376473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00876 573 Gene3D Glutaredoxin 21 128 - -
Cmo02g00876 573 SUPERFAMILY Translation proteins 355 445 IPR009000 -
Cmo02g00876 573 SUPERFAMILY Thioredoxin-like 25 118 IPR036249 -
Cmo02g00876 573 Gene3D - 129 350 IPR027417 -
Cmo02g00876 573 CDD EF1_alpha_III 447 550 - -
Cmo02g00876 573 PRINTS GTP-binding elongation factor signature 212 222 IPR000795 GO:0003924|GO:0005525
Cmo02g00876 573 PRINTS GTP-binding elongation factor signature 228 239 IPR000795 GO:0003924|GO:0005525
Cmo02g00876 573 PRINTS GTP-binding elongation factor signature 133 146 IPR000795 GO:0003924|GO:0005525
Cmo02g00876 573 PRINTS GTP-binding elongation factor signature 272 281 IPR000795 GO:0003924|GO:0005525
Cmo02g00876 573 PRINTS GTP-binding elongation factor signature 192 200 IPR000795 GO:0003924|GO:0005525
Cmo02g00876 573 PANTHER TRANSLATION FACTOR 125 571 - -
Cmo02g00876 573 CDD EF1_alpha 133 351 - -
Cmo02g00876 573 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 450 553 IPR009001 -
Cmo02g00876 573 Pfam Elongation factor Tu domain 2 372 437 IPR004161 GO:0005525
Cmo02g00876 573 Gene3D Translation factors 447 554 - -
Cmo02g00876 573 Gene3D Translation factors 353 440 - -
Cmo02g00876 573 Hamap Elongation factor Tu [tuf]. 126 556 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cmo02g00876 573 ProSiteProfiles Thioredoxin domain profile. 3 189 IPR013766 -
Cmo02g00876 573 CDD EF1_alpha_II 354 444 - -
Cmo02g00876 573 Pfam Elongation factor Tu GTP binding domain 130 345 IPR000795 GO:0003924|GO:0005525
Cmo02g00876 573 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 129 354 IPR000795 GO:0003924|GO:0005525
Cmo02g00876 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 373 IPR027417 -
Cmo02g00876 573 Pfam Thioredoxin 30 119 IPR013766 -
Cmo02g00876 573 PANTHER ELONGATION FACTOR 1-ALPHA 125 571 - -
Cmo02g00876 573 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 185 200 IPR031157 -
Cmo02g00876 573 Pfam Elongation factor Tu C-terminal domain 446 553 IPR004160 -
Cmo02g00876 573 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 125 557 IPR004539 GO:0003746|GO:0005525|GO:0006414
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00876 Cmo-Chr2:5316708 Cmo15g00449 Cmo-Chr15:2044595 0 dispersed
Cmo08g00989 Cmo-Chr8:6436558 Cmo02g00876 Cmo-Chr2:5316708 0 transposed
Cmo09g00512 Cmo-Chr9:2380021 Cmo02g00876 Cmo-Chr2:5316708 5.80E-85 transposed
Cmo17g00105 Cmo-Chr17:566104 Cmo02g00876 Cmo-Chr2:5316708 0 transposed
Cmo02g00876 Cmo-Chr2:5316708 Cmo20g00507 Cmo-Chr20:2423378 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00876 K03231 - csv:101213221 892.108