Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00880 ATGGAAATTGATCTGAACCTAACAGCCAGTGATGTGGGCAAGAATGCATATTGCAATGGAAATTGTGAAGAGGGTCGCTGCAATTGTTGTTTATCCTCTTCAACTTCTTCATGTTCCTCAAATTCATCGCCAGCTCTCGTCTCTTCTTCAACTTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCTAAGAAAGGAAATGTAGTTGTCTATTTCCCACAAGGTCACTTGGAGCAGATTGCCTCAGCCTCTCCCTTTTCCCCCATGGAAATGCGCACTTTTGACCTCCAGCCGCAGATCCTCTGCAGGGTCATCAATGTCCACTTACTTGCCAATAAGGAGAATGATGAGGTCTACACACAACTTACTCTGCTTCCCTTGCCAGAGTTCTTAGGCACTGGTCTAGAGGGCAAAGAGTTGGAGGAATTGGCGTTGAATGGAGCTGATGGAGATGGGAGCGGAGTGTCGCCTACTAGATCTACACCTCACATGTTTTGCAAAACACTCACAGCGTCTGATACGAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCCGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCGTCTCAAGAGCTAATTGCCAAGGACCTACATGGCGTCGAGTGGAGATTTAAACATATTTACAGAGGTCAACCTAGGCGGCATCTGCTGACTACTGGATGGAGTCTTTTTGTAAGCCAAAAGAATCTTATTTCTGGGGATGCAGTGCTGTTTTTAAGGGGTGAAAATGGAGAGCTAAGGTTGGGCATAAGGCGAGCTGTTCGGCCTAGAAATGGTCTTCCTAATTCAATTGTGGGCAACCAAAATTCTTGTGCAGATGATCTTGCTCGTGTGGTGAAAGCAATATCTACCAAGAGCATATTTGATGTGTTTTACAATCCAAGGGCATATCATGCACAGTTTGTTATATCTTGTCAGAAGTATGTAAAGAGCATCAATAATCCAGTGACCGTTGGCACAAGATTCAAAATGAGATTTGAGATGGATGATTCGCCAGAAAGAAGGTTTAATGGTGTAGTTCTCGGAATTGGTGACATGGATCCCTTGAGATGGCCGAACTCAAAGTGGAGATGCTTGACGGTACGATGGGATAAAGACGGTGATCATCAAGAACGTGTTTCACCCTGGGAGATCGAATCTTCTGTTTCTCTCCCACCCTTGAGTGTTCAGTCTTCTCCAAGGCTGAAGAAACTGAGGACTAGTCTGCAGGCAGCCCCACCCAACGCCTTTGCTGTAGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAATTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTATTGTATCACCGTTTTATGGACGTGATACTACAAAACGTTCCCTGGAGTTCGAGGTGCGATCTTCTGCACATCAAGCATCGGGTGGAGCTGAGAAGTATAGAGGTGACTACGTAAAGGTTCATCCGAACTCATCTTTCACAGGCTTTATGGAATCTGAAAGATTCCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACAAACAAGAAAACCAGAACATTGTTTAGGTGTTTGGGGAAAGTTCAATCTCAGTGACAACTCTTTTAACACATTTCACTCACCAAACTCTAGTTTTTATCACATGGCGTCAAATGGAGCCCAAAACATGTATTTCCCTCCTAGTGAATTTTACAGTACAGGCCAAGCTGCTGCTGTGATGCGCTCAAATGATGGCAACTTTCCAAGAGAGAGTGCCTTGTTCGGCCCATCTGTTGATGCTAGTGTTATGAGCACTACTTCAGGGTCGAATATAAGGAATTCAAAGGATGAAAATGTGAATGAGAATTCAACTGGCTGTAGACTTTTTGGCTTTTCCTTGACTACAGAAACTGCTACAAACATGCAGAGTTCAGGGAAGAGGAGTTGTACTAAGGTTCACAAACAAGGTAGTCTAGTGGGAAGAGCCATTGATCTCTCTAGACTCAATGGCTATTCTGATCTGCTTTCTGAACTGGAGCGGCTGTTTTGCATGGAAGGACTCTTGAAAGATCCTGATAAAGGATGGCGTGTACTGTACACCGACAACGAGAACGACGTAATGGTTGTTGGGGATTATCCATGGCTTGACTTCTGTGATGCGGTTTCAAAAATCCATATATACACCCAAGAAGAAGTGGAGAAGATGACAAATGGAGTGATCAGCGATGATACTCAAAGCTGCTTAGACCAAGCTCCTTTGTGTATGGAAGCCTCAAAATCCTCTTCAGTGGGCCAACCTGATTCTTCTCCCACAGTAATCTCAATCACCTTTGCTTCTTCAAAATCTGCACAGGGGGCTGCTCATGAGTATAGACTTTGA 2388 44.89 MEIDLNLTASDVGKNAYCNGNCEEGRCNCCLSSSTSSCSSNSSPALVSSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEMRTFDLQPQILCRVINVHLLANKENDEVYTQLTLLPLPEFLGTGLEGKELEELALNGADGDGSGVSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSLFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPNSIVGNQNSCADDLARVVKAISTKSIFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVLGIGDMDPLRWPNSKWRCLTVRWDKDGDHQERVSPWEIESSVSLPPLSVQSSPRLKKLRTSLQAAPPNAFAVGRGGFMDFEDSIRSSKVLQGQENVGIVSPFYGRDTTKRSLEFEVRSSAHQASGGAEKYRGDYVKVHPNSSFTGFMESERFLKVLQGQEICSLRPQTRKPEHCLGVWGKFNLSDNSFNTFHSPNSSFYHMASNGAQNMYFPPSEFYSTGQAAAVMRSNDGNFPRESALFGPSVDASVMSTTSGSNIRNSKDENVNENSTGCRLFGFSLTTETATNMQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYSDLLSELERLFCMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWLDFCDAVSKIHIYTQEEVEKMTNGVISDDTQSCLDQAPLCMEASKSSSVGQPDSSPTVISITFASSKSAQGAAHEYRL 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5451607 5457488 - CmoCh02G008800.1 Cmo02g00880 376477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00880 795 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 600 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo02g00880 795 Pfam B3 DNA binding domain 169 270 IPR003340 GO:0003677
Cmo02g00880 795 CDD B3_DNA 167 269 IPR003340 GO:0003677
Cmo02g00880 795 SMART B3_2 169 271 IPR003340 GO:0003677
Cmo02g00880 795 ProSiteProfiles PB1 domain profile. 650 734 IPR000270 GO:0005515
Cmo02g00880 795 SUPERFAMILY CAD & PB1 domains 652 729 - -
Cmo02g00880 795 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677
Cmo02g00880 795 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 607 766 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo02g00880 795 Gene3D - 646 739 - -
Cmo02g00880 795 Gene3D - 167 271 IPR015300 -
Cmo02g00880 795 Gene3D - 333 402 - -
Cmo02g00880 795 Pfam Auxin response factor 296 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo02g00880 795 PANTHER AUXIN RESPONSE FACTOR 30 600 - -
Cmo02g00880 795 PANTHER AUXIN RESPONSE FACTOR 607 766 - -
Cmo02g00880 795 SUPERFAMILY DNA-binding pseudobarrel domain 162 280 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00880 Cmo20g00509 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00880 Cmo-Chr2:5451607 Cmo03g01295 Cmo-Chr3:9773108 6.63E-147 dispersed
Cmo02g00880 Cmo-Chr2:5451607 Cmo20g00509 Cmo-Chr20:2433984 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9259 PF02362 B3 8.70E-21 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00880 - - cmo:103501935 1345.87