Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00885 ATGACCGTAATCGATGTCATCTTCCGAGTCGATTCCATTTGCAAGAAATACGAGAAGTATGATGTCGAGAAACAGCGCGAGCTCAATGCTTATGGTGATGATGTTTTTGCTCGCCTCTACGCCGCCGTCGAACTCGAAATCGAAGCCGCTCTCCAGAAATATGAGAGTGCCTGTACGGAGAAGAATAGGGCTGCTGCAGTTGCGATGAACGCTGAGGTTCGGCGGAAGAAGGCCCGATTGATGGATGAAGTTCCCAAGCTTCATAAATTGGCTCGCAAGAAGATTAAAGGGGTTCCGAAAGAAGAGCTTGAGGTCAGAGGTGATCTTGTTCTTGCGCTTGAAGAGAGGATTAAAGCGATTCCAGATGGGAGTACGACAGGCAAACCATCTGGAGGATGGGCCTCCACCTCATCTAACAATATTAAGTTTGATTCAACAACAGATGGACACTTCGAGAGCGAGTATTTCCAACAAAGCGAAGAATCGAGTCAATTTCGACAGGAGTATGATATGCGGAAGATGAAACAGGACGAAGGTCTGGATGTCATATCTGAAGGGTTGGATATGCTGAAAAATCTAGCCTATGATATGAATGAGGAATTGGATAGGCAAGTTCCATTAATTGACGAGATTGACTCAAAGGTAGACAAGGTGACTAATGAGATGAAAAACACCAATGTTAGGCTCAAGCAAACGCTGAATGAGGTGAGATCCAGCCAAAACTTCTGCATCGATATCATTCTTCTCTGTATAATTCTTGGAATCGCTTCTTACTTGTACAATATATTGAGCGGAAATGGTTGA 804 44.28 MTVIDVIFRVDSICKKYEKYDVEKQRELNAYGDDVFARLYAAVELEIEAALQKYESACTEKNRAAAVAMNAEVRRKKARLMDEVPKLHKLARKKIKGVPKEELEVRGDLVLALEERIKAIPDGSTTGKPSGGWASTSSNNIKFDSTTDGHFESEYFQQSEESSQFRQEYDMRKMKQDEGLDVISEGLDMLKNLAYDMNEELDRQVPLIDEIDSKVDKVTNEMKNTNVRLKQTLNEVRSSQNFCIDIILLCIILGIASYLYNILSGNG 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5474935 5477194 + CmoCh02G008850.1 Cmo02g00885 376482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00885 267 MobiDBLite consensus disorder prediction 121 141 - -
Cmo02g00885 267 Pfam SNARE domain 207 256 IPR000727 -
Cmo02g00885 267 SMART tSNARE_6 165 232 IPR000727 -
Cmo02g00885 267 CDD SNARE_Qc 175 231 - -
Cmo02g00885 267 Gene3D - 152 234 - -
Cmo02g00885 267 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cmo02g00885 267 PANTHER SYNTAXIN 1 261 IPR045242 -
Cmo02g00885 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Cmo02g00885 267 PANTHER SYNTAXIN-73 1 261 - -
Cmo02g00885 267 SUPERFAMILY SNARE fusion complex 163 230 - -
Cmo02g00885 267 Coils Coil 208 235 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00885 Cmo20g00513 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01094 Cmo-Chr1:9117464 Cmo02g00885 Cmo-Chr2:5474935 5.97E-123 dispersed
Cmo02g00885 Cmo-Chr2:5474935 Cmo18g01136 Cmo-Chr18:11656051 1.56E-06 dispersed
Cmo14g00195 Cmo-Chr14:879672 Cmo02g00885 Cmo-Chr2:5474935 5.53E-120 wgd
Cmo02g00885 Cmo-Chr2:5474935 Cmo20g00513 Cmo-Chr20:2456641 1.61E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00885 K08506 - csv:101211289 425.631