Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00893 ATGGGCAAGGACGTTGAGGCAGCCGAGCAAGGCCAATTCCAAGCCAAGGACTACCAAGACCCACCTCCGGCTCCTTTCATCGACCCAGACGAGCTCACCAAATGGTCCCTTTACAGAGCCGCCATCGCCGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACCGTTTTGACTGTCATCGGCTACTCCCACCAAAGTGACTCTAATGTCTCCAAAGACCCCTGTAACGGCGTCGGAATCCTCGGCATCGCCTGGGCCTTCGGCGGCATGATCTTTATCCTCGTCTACTGCACCGCCGGTATCTCCGGTGGCCACATAAACCCAGCAGTGACCTTTGGGCTGTTCTTGGCAAGGAAGGTGTCGTTGGTTAGGGCGGTGTTGTACATGGTAGCTCAGTGTGCGGGTGCTATCTGTGGCTGTGGGTTGGTTAAGGCTTTCCAGTCGGCGTACTACGTGAGGTATAATGGCGGCGCCAACATGCTCAGTGATGGGTACAACAAAGGCACTGGCTTGGGAGCTGAAATCATCGGTACCTTTGTTCTTGTCTACACCGTCTTCTCCGCCACGGATCCCAAAAGAAGCGCCAGAGATTCCCATGTTCCGGTTTTGGCGCCACTCCCAATTGGATTTGCAGTGTTCATGGTTCACTTAGCCACAATCCCCATCACCGGAACTGGAATTAACCCTGCAAGAAGCTTCGGAGCTGCTGTCATCTTCAACCACGAAAAAGCCTGGGATGATCAATGGATTTTCTGGGTTGGTCCATTCATTGGAGCTGCAATTGCTGCAATTTACCACCAGTATGTACTCAGAGCTGGCGCCATTAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAA 858 53.26 MGKDVEAAEQGQFQAKDYQDPPPAPFIDPDELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSHQSDSNVSKDPCNGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCAGAICGCGLVKAFQSAYYVRYNGGANMLSDGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNHEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5507658 5509309 - CmoCh02G008930.1 Cmo02g00893 376490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00893 285 PANTHER AQUAPORIN PIP2-4-RELATED 1 285 - -
Cmo02g00893 285 TIGRFAM MIP: MIP family channel proteins 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g00893 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Cmo02g00893 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cmo02g00893 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
Cmo02g00893 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g00893 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g00893 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g00893 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g00893 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g00893 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g00893 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g00893 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g00893 285 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00893 Cmo20g00519 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00893 Cmo-Chr2:5507658 Cmo03g01239 Cmo-Chr3:9556212 1.60E-173 dispersed
Cmo15g01298 Cmo-Chr15:8913115 Cmo02g00893 Cmo-Chr2:5507658 2.13E-140 dispersed
Cmo18g00896 Cmo-Chr18:10199572 Cmo02g00893 Cmo-Chr2:5507658 2.26E-152 dispersed
Cmo02g00893 Cmo-Chr2:5507658 Cmo20g00519 Cmo-Chr20:2483693 5.02E-146 wgd
Cmo02g00893 Cmo-Chr2:5507658 Cmo06g00371 Cmo-Chr6:1792397 1.04E-145 wgd
Cmo02g00893 Cmo-Chr2:5507658 Cmo07g00971 Cmo-Chr7:4762813 3.33E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00893 K09872 - csv:101215300 536.954