Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00896 ATGGCCATGGCTATAGCTCATCACAGAGAGAGTAGTAGTGGGAGCTTAACCAGGCATCTTGACAGTACTGGAAAGTACGTTCGATACACATCAGAGCAGGTTGAGGCTCTTGAGCGAGTCTATGCTGAATGCCCAAAGCCAAGTTCTCTTCGAAGGCAGCAGCTCATCCGGGAATGCCCAATTCTTTCAAACATAGAGCCCAAACAGATCAAAGTTTGGTTTCAGAATCGGAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGGAAATTGAATGCCATGAATAAATTGTTGATGGAGGAGAATGATCGGCTGCAGAAACAGGTGTCCCAATTGGTGTGTGAAAATGGGTTTATGCGGCAGCAATTACAAACAGTGCCAGCAGCAACCACTGATGCAAGCTGTGATTCTGTGGTCACCACTCCTCAACCCTCTAAAACAGATGCTAATAACCCAGCTGGGCTCCTCTCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCACAAAGTTGCGGCGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGCCTGCAAAGATTGCAGAGATCCTTAAAGATCGTCCATCGTGGTTTCGTGATTGTCGAAGCCTTGAGGTTTTTACTATGTTTCCAGCTGGAAATGGTGGAACAATTGAACTTGTCTACACACAGGTATACGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACGCTGAGATACACAATAACTTTGGAAAATGGCAGCCTTGTGGTCTGTGAGAGATCTCTCTCGGGTTCTGGTGCTGGTCCTAGTCCAGCTGCTGCTGCTCAGTTTGTTAGAGCTGAGATGCTCCCAAGTGGTTATCTGATTCGACCATGTGAGGGCGGTGGGTCCATCATACATATAGTAGATCACCTAAATCTTGAGGCATGGAATGTTCCTGAGGTGCTGCGACCGCTTTATGAATCGTCGAAAGTCGTGGCTCAGAACATGACTATTGCAGCACTACGGTACGTTAGGCAAATAGCTCAGGAGACGAGCGGTGAAGTGGTTTATGGTTTGGGCCGACAACCTGCTGTTTTGCGAACCTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATTTGGTGAATGGATTCAATGACAACGGATGGTCATTGATTAATTGTGAAGGTGCTGAGGATGTCGTACTTGCTGTGAATTCTACGAAAAATTTCGGCACGACATCCAATCCCGCGAACTCCTTAACGTACCCTGGGGGAGTTCTTTGTGCTAAGGCTTCCATGCTACTCCAAAATGTTCCTCCTGCCGTGCTAGTTCGTTTCTTGAGAGAACACCGTTCCGAATGGGCTGATTTCAACATTGATGCATACTCTGCAGCAACCCTTAAAGCTAATTCGTACGCATATCCAGGGATGAGGCCGACAAGGTTTACCGGGAGTCAAATCATCATGCCACTTGGCCATACAATCGAGCACGAAGAGTTGCTTGAAGTTATTCGTCTTGAAGGACATCCTATGGTACAAGAAGACGCTTTTGTTTCAAGGGACATTCATCTTCTTCAGATATGTAGTGGAATCAACGAGAACGCTGTAGGAGCTTGTTCAGAACTCATTTTTGCCCCGATCGATGAGATGTTTCCAGACGATGCCCCATTGCTGCCTTCTGGCTTTCGAATCATCCCATTGGATTCAAGAACAAGTGATGCTAAAGGTGCATTGACTACACAACGGACTCTCGATCTAACATCAAGTCTTGAAGTGGGTTCTGGAACAAGCAACGTTGCAGGAGATGCGTCGTCGAGTCAGTGCCCTCGATCCGTGTTAACTATTGCGTTCCAGTTTCCTTTCGAGAGCAGCATGCAGGATAACGTAATGAACATGGCACAGCAGTACGTACGTAGCGTCATTTCCTCGGTGCAGAGAGTTGCAATGGCCATATCTCCTTCTGGGGGCAGTCCATCACTAGGTCCAAAGTTGTCTCCTGGTTCTCCAGAAGCTCTCACTCTAGCACATTGGATATGCAAGAGCTATAGTTTACAATTAGGAACGGAGTTGATCAGTTCAGATAGCTTGGAAAGCGATTCCCTTTTGAAAAATCTCTGGAATCATCAGGATGCGATATTGTGCTGTTCGTTAAAGTCATTGCCTGTTTTCATGTTTGCAAACCAAGCTGGGCTCGACATGTTGGAGACAACTCTAGTAGCCTTACAAGACATCACATTGGATAAAATCTTCGACGAGGCGGGTCGTAAAGCTTTGTGTTCTGATTTTCCAAAGTTAATGCAGCAGGGATTTGCGTACTTACCTGGAGGAATCTGTGCATCGACAATGGGGCGACACGTTTCGTACGAACAAGCGATTGCATGGAAAGTCCTCGAGGCAGACGAGACGACGGTCCATTGCCTTGCCTTCTCCTTCATAAACTGGTCTTTTGTTTGA 2532 47.08 MAMAIAHHRESSSGSLTRHLDSTGKYVRYTSEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAATTDASCDSVVTTPQPSKTDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPAKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVVCERSLSGSGAGPSPAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQNMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDLVNGFNDNGWSLINCEGAEDVVLAVNSTKNFGTTSNPANSLTYPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGINENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRTSDAKGALTTQRTLDLTSSLEVGSGTSNVAGDASSSQCPRSVLTIAFQFPFESSMQDNVMNMAQQYVRSVISSVQRVAMAISPSGGSPSLGPKLSPGSPEALTLAHWICKSYSLQLGTELISSDSLESDSLLKNLWNHQDAILCCSLKSLPVFMFANQAGLDMLETTLVALQDITLDKIFDEAGRKALCSDFPKLMQQGFAYLPGGICASTMGRHVSYEQAIAWKVLEADETTVHCLAFSFINWSFV 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5524257 5529868 + CmoCh02G008960.1 Cmo02g00896 376493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00896 843 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Cmo02g00896 843 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 843 - -
Cmo02g00896 843 Pfam Homeodomain 26 83 IPR001356 GO:0003677
Cmo02g00896 843 CDD START_ArGLABRA2_like 158 374 - -
Cmo02g00896 843 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 843 IPR044830 GO:0003700
Cmo02g00896 843 Gene3D - 19 91 - -
Cmo02g00896 843 Pfam MEKHLA domain 699 842 IPR013978 -
Cmo02g00896 843 Pfam START domain 164 372 IPR002913 GO:0008289
Cmo02g00896 843 SMART HOX_1 22 88 IPR001356 GO:0003677
Cmo02g00896 843 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Cmo02g00896 843 SMART START_1 163 373 IPR002913 GO:0008289
Cmo02g00896 843 CDD bZIP 77 116 - -
Cmo02g00896 843 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Cmo02g00896 843 CDD homeodomain 25 85 IPR001356 GO:0003677
Cmo02g00896 843 Gene3D - 200 378 IPR023393 -
Cmo02g00896 843 Coils Coil 80 121 - -
Cmo02g00896 843 SUPERFAMILY Bet v1-like 163 375 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00896 Cmo20g00522 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00896 Cmo-Chr2:5524257 Cmo12g00825 Cmo-Chr12:7468484 0 dispersed
Cmo13g00257 Cmo-Chr13:2131711 Cmo02g00896 Cmo-Chr2:5524257 5.76E-40 dispersed
Cmo02g00896 Cmo-Chr2:5524257 Cmo20g00522 Cmo-Chr20:2503759 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9260 PF01852 START 1.50E-46 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00896 K09338 - csv:101215773 1577.76