Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00900 ATGCTTAAGAGGAAGAAGAAGAAGGGGAACGGGTTTGTTCTTGACGGGTTTCTCTTCTTTTTGGTGTTCTTTGTTTACTGGGCATTGCATTTGGGGGAAAACGCAATCATTCGAATGAAAGAAGCGGATAAGAACTTGGATCCTCAACTATGGCATGCCTGTGCGGGAGGCATGGTCCAGATGCCTGCTATTAACTCCAAGGTCTTTTACTTCCCTCAGGGTCATGCCGAGCACGCTCAGGCCGCCGTCGATTTCACTTCTTCACTTAGAATCCCGCCGCTTATTCCATGTAGAGTGCTCGCCGTCAAGTTCTTGGCTGATCATGAAACGGATGAAGTTTATGCGAATGTACGACTGGTTCCACTGGCGAATAACGAAATTAATTGCGAGGAAGAGGGTGGTTTTGGGAGTAATGGGTCAGAGAATAACATGGAGAAACCGGCTTCCTTTGCCAAGACGTTGACCCAATCCGATGCTAACAACGGCGGTGGGTTCTCGGTTCCGAGGTACTGTGCGGAGACGATATTTCCGAGGCTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCTAAGGATGTCCACGGCGAGGTTTGGAAGTTTCGGCATATTTACAGGGGGACGCCTCGTCGGCATTTATTAACTACTGGGTGGAGTAGTTTTGTCAATCAGAAGAAGCTTGTCGCCGGCGATTCGATTGTTTTTCTGAGATCCAAAAATGGCGACCTCTGTGTTGGAATCCGGCGAGCCAAACGGGCAATTGGGTGTGCTGCTGATCACCCATATGGCTGGAATCCCGGCGGTGGAAATAGCATCCCACCCTACGGTGGGTTGACGATGTTTCTGAGAGATGAGGACAACAAGTTGAGTAGAAAAGGGTCTTTGAGTTCTAATGGTGGTGGGAATTTGAGGGGAAAAGGCAAAGTTAGGCCAGAATCAGTGATTGAAGCGGCGGCGCTGGCAGCGAGTGGGCAGGCGTTTGAGGTGGTTTATTACCCACGCGCCAGCACGCCGGAGTTCTGTGTTAAGGCCTCATCGGTTCGAGCCGCCATGAGAATCCAGTGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAAACTGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCCTCTGTTCAAGTTGCTGATCCTATCCGCTGGCCCAATTCTCCATGGCGGCTTCTTCAGTGGTTTATAGGGCCTTTAAGTTGCCATTTCTTGTATCAGCCACCAAGAAGTAAATTTCAATGTATCTTGAAACGATTGGTTTATTACTATAGGCTCAATGGTAAGGTGACATGGGACGAGCCAGATTTGCTACAGAACGTGAAGCGTGTTAGCCCATGGTTGGTCGAACTGGTATCGAACATGCCCGTCATTCAACTATCACCATTCTCTCCACCAAGAAAGAAGTTTCGACTACCTCAACACCCCGACTTTCCCCTCGACAGCCAATTCCAATTGTCGTCGTTTCCAAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTCCTCAGATTTCCATCTCAACAGCAAACTGCAACTTGGGCTGCTTCCATCCAGTTTTCAGCAGCTTGATTTTCACTCCAGAATTTCCCATAGATCGGTTACAGACCACAGAGGCAGCGGCAGTCAGAACTCGTCGGCACTGCTCAATGCAGAGAACACTGGTCTGAAGTTGGAACGATCCGATTCTGTGAAGAAGTATCAGTTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAAATCACACGCAGCTCTTCCGGTGACGTTCACTCACCTCGGACCGAGAAAAGTTCCTTAGACGTGAATTTGGAAAGAGTGAAATTCCTATCTGATGGCTCAGGATACACTTTCAAGCAGCAGCAGATATCTCCAAACAAGTCACCGGGAGCTGGATTTCCATGGTACCAGGGTTATCAAGCCACGGAACTCGGCCTAGACATCGGTCACTGCAAGGTATTCATGGAGTCAGAAGATGTTGGCCGAACGCTTAACCTTTCGGTCATTGGCTCATATGAAGAACTATACCGGAGGCTGGCAAACATGTTCGGAATGGAGAAACCAGACATTCTTAGCCATGTCCTTTACCAAGATGCAACAGGTGCTGTCAAACAAGCTGGAGACAAACCATTCAGTGATTTTATCAAAACAGCTAGAAGACTGACAATTCTAACTGACTCGGGGTCGGACAAGATGGTCGGAAGGAGATTGATGGATGGACTGCGAAGTGGTGAAAATGGATTAGATTCCTCAAACAAGACGGGCCCCTTGAGCATATTTGCATAG 2370 48.27 MLKRKKKKGNGFVLDGFLFFLVFFVYWALHLGENAIIRMKEADKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQAAVDFTSSLRIPPLIPCRVLAVKFLADHETDEVYANVRLVPLANNEINCEEEGGFGSNGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCAADHPYGWNPGGGNSIPPYGGLTMFLRDEDNKLSRKGSLSSNGGGNLRGKGKVRPESVIEAAALAASGQAFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQWFIGPLSCHFLYQPPRSKFQCILKRLVYYYRLNGKVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDSQFQLSSFPSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISSSDFHLNSKLQLGLLPSSFQQLDFHSRISHRSVTDHRGSGSQNSSALLNAENTGLKLERSDSVKKYQFLLFGQPILTEQQITRSSSGDVHSPRTEKSSLDVNLERVKFLSDGSGYTFKQQQISPNKSPGAGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKMVGRRLMDGLRSGENGLDSSNKTGPLSIFA 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5550636 5554600 - CmoCh02G009000.1 Cmo02g00900 376497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00900 789 CDD B3_DNA 149 250 IPR003340 GO:0003677
Cmo02g00900 789 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677
Cmo02g00900 789 Pfam Auxin response factor 318 401 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo02g00900 789 Gene3D - 432 464 - -
Cmo02g00900 789 Gene3D - 356 402 - -
Cmo02g00900 789 Gene3D - 148 252 IPR015300 -
Cmo02g00900 789 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Cmo02g00900 789 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 401 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo02g00900 789 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 436 765 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo02g00900 789 ProSiteProfiles PB1 domain profile. 676 756 IPR000270 GO:0005515
Cmo02g00900 789 Gene3D - 676 761 - -
Cmo02g00900 789 SMART B3_2 150 252 IPR003340 GO:0003677
Cmo02g00900 789 SUPERFAMILY DNA-binding pseudobarrel domain 145 255 IPR015300 -
Cmo02g00900 789 PANTHER AUXIN RESPONSE FACTOR 40 401 - -
Cmo02g00900 789 PANTHER AUXIN RESPONSE FACTOR 436 765 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00900 Cmo20g00525 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00900 Cmo-Chr2:5550636 Cmo03g01235 Cmo-Chr3:9536729 0 dispersed
Cmo02g00900 Cmo-Chr2:5550636 Cmo20g00525 Cmo-Chr20:2533242 0 wgd
Cmo02g00900 Cmo-Chr2:5550636 Cmo07g00959 Cmo-Chr7:4686626 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9261 PF02362 B3 8.20E-22 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00900 - - bhj:120088819 1317.37