Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00904 ATGACCGGTACATGGAAGAAACTCAAGATGGCTTTTGGGACTCGTATGTGTCTCCATCTTCCTCGTGTGTCTGGGGATTCGACGCCGTCTAGTAATGTTGCTCCCATGTCCTCCGAGGCTGTTTCTCCGATGGGTAGTGCTTCAAATTGCCGCCAATCTTCGCCGATTCATTCTTCGTCTAGTTCCCGTGTATCCAAAAGCGGATCAAGGTCTTCTAGGAGGACCTGTGCAATATGCTTGATCACCATGAAAGCAGGGAATGGGCATGCTATTTTCACTGCAGAGTGTTCTCACTCTTTCCATTTCCATTGCATTGCCTCAAATGTAAAGCATGGGAGCCAAATTTGCCCTGTTTGCAGAGCGAAATGGAAAGAAATTCCTTTCCAGATTTCCACTTCGGATTGCGCTAACCCCAGAACCAACCCAGTTGGCTCGGCCCTAGACGATCCATGGATGGCTATGGTTCGACAGATGGCTTCTCCTCGCTCCGATACTGGTAGACAGATCTCCTCTCTTTTTCATGGTTCTGAACCAGTAGCTTATGATGATGATGAAGCTTTAGATCAACAACCTCATGCCACCGAGAGAAGCACATCAAATGATGGTGCCACTGTTCATAGTTGCACTGATAAAGTAGAGGTCAAAACGTACGCTGAAATTTCAGCTGTTCCAAGATCAGTTTCTCGTGATCACTTCTCTGTGTTAGTCCATGTCAAGGCTCCTTTCTCCATTGCTACACAAAATAACTCTAGAAGCCAGGCTGCATTGCCTCTATTGAATCAACCTTCTCGTGCACCAGTTGATCTGGTAACAGTGCTTGATGTTAGTGGCAGTATGGCAGGTACGAAGCTTGCCCTGCTCAAACGTGCTATGGGTTTTGTGATCCAGAATCTCGGTCCTTCTGATCGGCTTTCGGTCATATCATTCTCCTCAACCGCTCATCGTCTTTTCCCGCTTTCTCGAATGACTGACCTTGGACGACAGCAGGCATTGCGGGCTGTTAATTCTCTATCATCAAACGGTGGGACAAACATTGCTGAAGGCTTGAAGAAAGGTGCCAAGGTGTTGGTTGACCGGAAGTTGAAGAATCCTGTTGCTAGCATTATAATGTTGTCTGATGGGCAGGATACATATACTTTCAATGGTTCTAGTAGTGCTCGTCCCCAAATAGATTACGAGTCCCTCCTTCCAGTTTCAATTCTTCGCAATAACCACTCTGGAATGCAGCAGATACCGGTGCATACGTTTGGAGTCGGTGCAGACCATGATCCCGTGACAGCGCATACGATTTCCAACGCATCTGGGGGCACATTTTCAGTTATAGAAAACGAAAGCACAATCCAGGATGCATTCGCTCAGTGCATTGGTGGCCTCTTGAGCGTGGTGGTGCAGGATCTGCAGGTTGAAGTAAGATGCATTCACCCAAGTCTGCAGCTTGGTTCAATACAAGCAGGAAGTTACCAAGCCAGCATCACAGAACGTGCAAGACGTGCCACCGTACACTTCGGAGACTTGTATGCCGAAGAAGAGAGGGACTTTTTGTTGACACTCAACATTCCAGTTGATGAATCTGAAGGTGAGATGCCATTGCTAAAGGTTAAATGCGTTTACAAGAACCCCATCACCAAAGAGCCAATCACTTTGGACGAGGTCAGTGAGGTTCAAATACAGAGGCTAGACAGAGTAGGGGAACAAGCAGTGTCATTAGAAGTAGACAGGCAGCGAAATAGATTCCGAGTGGCAGAGGCGATATCGGAGGCTAGAGTTGCTGCGGAACGGGGTGATTTAGCTGGTGCAGTGTCTGTGTTGGACAATTGTTATAGAACCGTGTCTGAATCAGCATCTGGTCGAGGTAGCGACCAATTTTGTGCAGCTCTTTGCGCCGAGCTGAAGGAAATGAAGGAAAGAATGGCGACAAAGCATATGTACGAGGCGTCTGGAAGAGCATATGTGCTGTCGGGATTGAGCTCGCATTCATGGCAGAGAGCAACTGCGAGAGGGGATTCAGTGGACATGGAAAGCGCAGTGCAGAGTTATCAAACGCCATCCATGGTGGATATGGTGACTCGTTCTCGGACCATGATATTGGGGTCGCCGCCATCTCAAAGAACACTGATTCCCACTCACTCTTTCCCGGTGAGAGCACTGCAGCCGCCATCTCCGCGGACTGGTGCTGTAAATGCTGCTTCAGGTTCAGCTTATGCAGAGTTTGGTAATACCAAGGTCATTGCTTCTGTGGATCAGAAAACAAGGAGTTCTCTTCATTTGCTACATAAAGCTTTGGAGGGGGCAATAATACTGGAGATGTTCCCCAAGACAACTGTTGATGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTGAGCTTCCTGTTGTGATATCATGTGCTAGTCTTGCTCTTGCTGATGCAGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGGAAGAATCTTCTTATTGATCCTATGTTGGAAGAGGAAAACTACGAAGATGGAAGTTTGATGATAACTTGTATGCCATCTCGTTACGAACTCACTCAGCTCACTATCACAGGCCAGTGGTCAACTGCTAAAATTAATGAGGGTATGCAATTTTGCGTTGATGCGTCGTGTAAGCTTGTGAAGATCATGCGGTCATGTTTGAAGGAATCTGCCACCATTTCAGAGGTTGACTACATTAGAACTGCAGCCAGAGGTTCATTTGGGGAGATCTTTATGGCTTATGGTAGTTCTAGATCCGTAAGATTCCAAGATGATCTTGAATCATCCACCCTGCCTACCATCAACGGTGGTGGCGTGAAGAAGATCATATACAACCTTGATGGCACACATATACCAGAATCGACGGCTTCCAGGAAGTCTGGAAGATCCTTGCGAGCTAAAGTTCTGTCTAGAGTTTTCTCTGAGGATTATGAGAGAGTGCAAAGAAAAATATTGGATCCTAGAGGACAAGCCATAAGGAGATGGAATAAAATCTTTTTAGTAGCTTGTTTAATCTCTTTGTTTGTAGACCCACTTTTCTTTTACTTGCCTGTCGTCCGGGATAACGTCTGCATTGATATAGTAGTAGGTCTCGAAGTCGTCCTCACAATTATAAGAACAATAGCTGATGTTTTCTACACAGTTCATATTCTCATTAAGTTTCGTACAGCTTATGTCGCGCCCTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTTATAGACACTTGTAAGATAGCAGTGAGGTATCTACGGCATGGTTTCTGGATTGATTTCATTGCAGCCGTGCCAGTTCCTCAGGTACTGATATGGATTGTCATCCCCAACCTCAGTGGCTCAATAATGACAAACACCAAGAACTTTCTGCGGTTCTTTCTCATTTTCCAGTACATCCCAAGGCTTTTTCTCATATTTCCTCTCTCAACACAAATTGTTAAGGCCACTGGACTTGTGACACAGACAGCATGGGCTGGAGCTGCTTATAACCTGATCCTGTACATGTTGGCAAGCCATGTTCTAGGAGCTTGCTGGTACCTTCTTTCAATTGAGCGACAAGAAGCATGCTGGAGAACACTTTGTAAGTTTGACAAATCTTGTAACAATGGATTCTTCGACTGTCATAAGATCGATGACCCTCAAAGGGGCTCGTGGTTTCGTATGAGCAACATCAAAAACACATGCAATCCAAATGATCCCTTTTATCAATTTGGTATATATGGTGATTCAATAACTTTCCATGTCACAACCTCAACGTTTTTCAACAAGTACTTCTACTGTCTTTGGTGGGGTCTGAAAAATCTCAGTTCCTTGGGACAAAATCTTGCCACAAGCACTTTTGTTGGGGAAATAGTTTTTGCCATAATTGTGGCAACTCTTGGACTGGTTCTGTTTGCATTGCTCATTGGCAATATGCAGAAATACCTCCAATCGACGACTGTCCGGTTAGAAGAGTGGAGAATCAGGAGAACTGATACAGAGCAATGGATGCATCACAGGCAGCTACCTCCAGAGCTCAGACAATCTGTCCGCAGATATGATCAGTATAAGTGGGTAGCAACTCGAGGAGTTGATGAAGAATCGCTGCTTAGAAGCCTTCCATTGGATCTCCGAAGAGACATAAAACGTCACCTCTGCCTCGATCTTGTTCGAAGGGTTCCATTGTTCGATCAAATGGATGAAAGAATGCTAGATGCAATATGCGAGAGACTTAAGCCTGCCTTGAGCACAGAAGGCACATTTCTGGTGCGAGAGGGCGATCCAGTCAATGAAATGCTATTCATAATCAGAGGACATCTCGATTCATACACCACTAATGGCGGCAGAACAGGATTCTTCAACTCCTGTTGTATCGGTCCAGGTGATTTCTGTGGTGAGGAGCTGCTAACATGGGCACTCGATCCTCGTCCCAGCGTTGTGCTTCCTTCTTCCACTCGCACGGTCAAAGCCATCTCAGAAGTAGAAGCATTTGCTCTCATAGCAGAGGATTTGAAATTCGTATCCTCCCAGTTCAGAAGACTCCACAGCAAACAACTCAGGCACAAGTTTCGATTCTACTCGCATCAATGGCGAACATGGGCTGCCTGCTTTGTTCAAGCTGCATGGCGGCGATATAAGAGACGCAAAGGAAGAGCCGAGCTCATGGCTAGAGAGAGGTATCCAGCTACCAACCTCGACTCGCCATTTTCACCACCAACTGCATCAAATTCGGATACATGTTCAGGAAACCCTAGAATAAGGATGAACAAGCGCTGTGTGTCGGATGCCGGGGTAGTAAGCTCACTGCAGAAGCCAGAAGAGCCCGACTTCTCCATTGTCGAGGAATGA 4818 46.14 MTGTWKKLKMAFGTRMCLHLPRVSGDSTPSSNVAPMSSEAVSPMGSASNCRQSSPIHSSSSSRVSKSGSRSSRRTCAICLITMKAGNGHAIFTAECSHSFHFHCIASNVKHGSQICPVCRAKWKEIPFQISTSDCANPRTNPVGSALDDPWMAMVRQMASPRSDTGRQISSLFHGSEPVAYDDDEALDQQPHATERSTSNDGATVHSCTDKVEVKTYAEISAVPRSVSRDHFSVLVHVKAPFSIATQNNSRSQAALPLLNQPSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVISFSSTAHRLFPLSRMTDLGRQQALRAVNSLSSNGGTNIAEGLKKGAKVLVDRKLKNPVASIIMLSDGQDTYTFNGSSSARPQIDYESLLPVSILRNNHSGMQQIPVHTFGVGADHDPVTAHTISNASGGTFSVIENESTIQDAFAQCIGGLLSVVVQDLQVEVRCIHPSLQLGSIQAGSYQASITERARRATVHFGDLYAEEERDFLLTLNIPVDESEGEMPLLKVKCVYKNPITKEPITLDEVSEVQIQRLDRVGEQAVSLEVDRQRNRFRVAEAISEARVAAERGDLAGAVSVLDNCYRTVSESASGRGSDQFCAALCAELKEMKERMATKHMYEASGRAYVLSGLSSHSWQRATARGDSVDMESAVQSYQTPSMVDMVTRSRTMILGSPPSQRTLIPTHSFPVRALQPPSPRTGAVNAASGSAYAEFGNTKVIASVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINEGMQFCVDASCKLVKIMRSCLKESATISEVDYIRTAARGSFGEIFMAYGSSRSVRFQDDLESSTLPTINGGGVKKIIYNLDGTHIPESTASRKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQAIRRWNKIFLVACLISLFVDPLFFYLPVVRDNVCIDIVVGLEVVLTIIRTIADVFYTVHILIKFRTAYVAPSSRVFGRGELVIDTCKIAVRYLRHGFWIDFIAAVPVPQVLIWIVIPNLSGSIMTNTKNFLRFFLIFQYIPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRTLCKFDKSCNNGFFDCHKIDDPQRGSWFRMSNIKNTCNPNDPFYQFGIYGDSITFHVTTSTFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEIVFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEESLLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCCIGPGDFCGEELLTWALDPRPSVVLPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKGRAELMARERYPATNLDSPFSPPTASNSDTCSGNPRIRMNKRCVSDAGVVSSLQKPEEPDFSIVEE 1605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5575654 5587772 - CmoCh02G009040.1 Cmo02g00904 376501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00904 1605 ProSiteProfiles cAMP/cGMP binding motif profile. 1385 1482 IPR000595 -
Cmo02g00904 1605 CDD CAP_ED 1385 1516 IPR000595 -
Cmo02g00904 1605 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 917 1604 - -
Cmo02g00904 1605 Gene3D Helix hairpin bin 1312 1376 - -
Cmo02g00904 1605 Pfam 3' exoribonuclease family, domain 2 809 870 IPR015847 -
Cmo02g00904 1605 PANTHER - 917 1604 - -
Cmo02g00904 1605 CDD vWA_C3HC4_type 267 442 - -
Cmo02g00904 1605 ProSiteProfiles Zinc finger RING-type profile. 76 120 IPR001841 -
Cmo02g00904 1605 CDD RING-H2 76 120 - -
Cmo02g00904 1605 CDD RNase_PH_MTR3 722 888 - -
Cmo02g00904 1605 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 127 IPR013083 -
Cmo02g00904 1605 SUPERFAMILY vWA-like 264 455 IPR036465 -
Cmo02g00904 1605 SMART VWA_4 266 451 IPR002035 -
Cmo02g00904 1605 SUPERFAMILY Ribonuclease PH domain 2-like 807 890 IPR036345 -
Cmo02g00904 1605 Gene3D von Willebrand factor, type A domain 268 456 IPR036465 -
Cmo02g00904 1605 SUPERFAMILY Voltage-gated potassium channels 985 1307 - -
Cmo02g00904 1605 Pfam von Willebrand factor type A domain 268 453 IPR002035 -
Cmo02g00904 1605 Pfam Ion transport protein 994 1312 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo02g00904 1605 Gene3D Jelly Rolls 1383 1503 IPR014710 -
Cmo02g00904 1605 Pfam 3' exoribonuclease family, domain 1 752 805 IPR001247 -
Cmo02g00904 1605 Pfam VWA / Hh protein intein-like 620 692 IPR032838 -
Cmo02g00904 1605 Gene3D - 997 1309 - -
Cmo02g00904 1605 SMART cnmp_10 1385 1516 IPR000595 -
Cmo02g00904 1605 SMART ring_2 76 119 IPR001841 -
Cmo02g00904 1605 MobiDBLite consensus disorder prediction 23 69 - -
Cmo02g00904 1605 Gene3D - 715 897 IPR027408 -
Cmo02g00904 1605 SUPERFAMILY RING/U-box 71 126 - -
Cmo02g00904 1605 Pfam Ring finger domain 75 120 IPR001841 -
Cmo02g00904 1605 SUPERFAMILY Ribosomal protein S5 domain 2-like 716 805 IPR020568 -
Cmo02g00904 1605 MobiDBLite consensus disorder prediction 24 69 - -
Cmo02g00904 1605 SUPERFAMILY cAMP-binding domain-like 1315 1510 IPR018490 -
Cmo02g00904 1605 ProSiteProfiles VWFA domain profile. 268 455 IPR002035 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00904 Cmo-Chr2:5575654 Cmo20g00531 Cmo-Chr20:2576207 0 dispersed
Cmo07g00366 Cmo-Chr7:1671235 Cmo02g00904 Cmo-Chr2:5575654 1.15E-31 dispersed
Cmo14g00651 Cmo-Chr14:3272989 Cmo02g00904 Cmo-Chr2:5575654 0 dispersed
Cmo18g01335 Cmo-Chr18:12659717 Cmo02g00904 Cmo-Chr2:5575654 0 dispersed
Cmo04g00289 Cmo-Chr4:1450313 Cmo02g00904 Cmo-Chr2:5575654 1.11E-12 transposed
Cmo16g00865 Cmo-Chr16:4610071 Cmo02g00904 Cmo-Chr2:5575654 2.17E-120 transposed
Cmo20g00530 Cmo-Chr20:2565634 Cmo02g00904 Cmo-Chr2:5575654 1.43E-80 transposed
Cmo02g00904 Cmo-Chr2:5575654 Cmo20g00529 Cmo-Chr20:2559226 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00904 K05391 - csv:101210775 1294.64