Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00919 ATGCTCGATTCTTTCTACTACCTCGCCGGCTCCCCCGGCCCCTCCGGCTTCGGCTCCAAATCCACCGCCGAACAAGTCACCGCCTCCTCTCCTCTCCCCCTCCCTTCCCTCACCGCCATCATCACCGGCGCCACGTCTGGTATTGGAGCTGAGACGGCTCGGGTTCTAGCCAAACGTCGGGTTCGTCTCATCCTCCCCTCCCGGAACCTGAAAGCCGCCGAGGAAACCAAGGCGCGGATCCTCTCCGAATGCTCCGATTCCCAAATCATCGTTATGCCACTTGATTTGAGTTCTCTTTCTTCCGTTACAAACTTTGTTCATCAATTTCAATCTCTCAACCTTCCTCTAAACCTCCTCATAAATAACGCTGGCAAATTCTCGCATGACCACGCAATTTCCGAGGACGGGATCGAAATGACCTTCGCCACTAATTATTTGGGTCATTTTCTGTTGACGAAACTGTTGGTGAATACGATGGCGGAGACGGCGAAAGCGACGGGGGTTGAAGGGCGGATAGTGAACGTGTCGTCGAGTATTCACGGGTGGTTTTCCGGCGACATGATTAAATATCTGGGCCAGATAAGCCGGAACAAAAGCAGGAACTACGATGCCACACGTGCGTACGCGCTCTCCAAGCTTGCCAACGTTCTTCACACGCACGAACTCGCTCGCAGATTGAAGCAAATGGAAGCTAATGTTAGTGTGAACTGCGTTCATCCCGGAATTGTAAGAACTCGTCTCACCAGAGATCGTGAAGGTTTCATAACTGATTTGGTGTTCTTTATGGCTTCCAAGCTGTTGAAGACAATCCCTCAGGCGGCGGCAACGACATGCTACGTGGCGACGAGCCCGAGGTTAAGCCACGTCACCGGGAAGTATTTTTCAGACTGCAACGAAGCCTCGCCGTCGAAGCTCGCCGCTAGCCCAACGGCAGCCGCCCGTCTCTGGTCCGCCTCCGAGATCATGGTCAACACTAAGTCAAAGCTGGTTTTCGATCCAAACAACGGGTTGGAGTAA 1017 53.29 MLDSFYYLAGSPGPSGFGSKSTAEQVTASSPLPLPSLTAIITGATSGIGAETARVLAKRRVRLILPSRNLKAAEETKARILSECSDSQIIVMPLDLSSLSSVTNFVHQFQSLNLPLNLLINNAGKFSHDHAISEDGIEMTFATNYLGHFLLTKLLVNTMAETAKATGVEGRIVNVSSSIHGWFSGDMIKYLGQISRNKSRNYDATRAYALSKLANVLHTHELARRLKQMEANVSVNCVHPGIVRTRLTRDREGFITDLVFFMASKLLKTIPQAAATTCYVATSPRLSHVTGKYFSDCNEASPSKLAASPTAAARLWSASEIMVNTKSKLVFDPNNGLE 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5656544 5658787 + CmoCh02G009190.1 Cmo02g00919 376516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00919 338 Pfam Enoyl-(Acyl carrier protein) reductase 200 293 - -
Cmo02g00919 338 PRINTS Glucose/ribitol dehydrogenase family signature 38 55 IPR002347 -
Cmo02g00919 338 PRINTS Glucose/ribitol dehydrogenase family signature 114 125 IPR002347 -
Cmo02g00919 338 PRINTS Glucose/ribitol dehydrogenase family signature 164 180 IPR002347 -
Cmo02g00919 338 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Cmo02g00919 338 PRINTS Glucose/ribitol dehydrogenase family signature 231 248 IPR002347 -
Cmo02g00919 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 300 IPR036291 -
Cmo02g00919 338 PANTHER RETINOL DEHYDROGENASE 9 328 - -
Cmo02g00919 338 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 114 125 IPR002347 -
Cmo02g00919 338 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 178 IPR002347 -
Cmo02g00919 338 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Cmo02g00919 338 Pfam short chain dehydrogenase 38 178 IPR002347 -
Cmo02g00919 338 Gene3D - 26 328 - -
Cmo02g00919 338 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 9 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00919 - - - csv:101209698 553.132
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00919 Cmo16g01268 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00919 Cmo-Chr2:5656544 Cmo10g00115 Cmo-Chr10:505216 7.59E-125 dispersed
Cmo06g00598 Cmo-Chr6:2952288 Cmo02g00919 Cmo-Chr2:5656544 2.98E-10 dispersed
Cmo15g01349 Cmo-Chr15:9237234 Cmo02g00919 Cmo-Chr2:5656544 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g203 . . . Bda08g00756 . Bpe07g00255 . . . Cmo16g01268 Cma02g00912 . Car02g00663 . . Cpe14g01011 . . . . . . . . Cla07g00789 Cam07g0852 Cec07g0905 Cco07g0887 Clacu07g0827 Cmu07g0830 Cre07g1188 . . . . Lsi07g01120 . . Cme07g01644 . . . . . . . Bma12g00444 . Cmo02g00919 . . Cma16g01224 . Car16g01152 Cpe08g00909 . . . . . . . . . . . . . . . . . Chy07g01228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002525 1 2 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 2 2 1 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00919 Cmo_Chr02 FPKM 6.191253 7.462572 13.965403 12.410682 112.609436 109.319031 118.891716 8.114319 7.16984 7.217632