Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00922 ATGTCAAACCCAAACTCCAAACCTGGCTCAGGCTCGAGGACCATGTCGGCTCTGCAAACCTCTCTGAATTTTCGCTGGAGTAGCGTAGGTGGGAAGGCTGAGGAATCGTTAATTATGAGGCTGTTGAAAGTAGCAACGTGTAATTTGAATCAATGGGCCATGGATTTTGATTGTAATGTGAAGAACATCAAAGAGTCTATTGACGAGGCTAAACGTGCTGGCGCTGTCATCCGACTTGGCCCTGAACTCGAGATTACTGGATATGGCTGTGAAGACCATTTCTTGGAGCTCGACACTGTCATGCATGCATGGGAATGCTTGAAGGATATACTTTCGGGTCCTTTGACTGATGGGATATTGTGCAGCATTGGCATGCCTGTTATTAAGGACTCTGAGCGTTACAATTGTCAAGTGCTCTGTTTCAATAGGAAAATTATTATGATACGTCCAAAAATGTGGCTTGCAAATGATGGGAATTACAGGGAGCTACGGTGGTTCACAGCATGGAAGCTAAAGGACAAGCTTGTGGATTTTCAGCTGCCTAGAGATATCTCTGAGGCTCTGTCACAAACATCTGTGCCTTTTGGCTATGGATATATTCAGTTTCTAGACACAACTGTTGCTGCTGAAGTTTGTGAAGAACTTTTTACACCTATTCCACCGCATGCTGAACTTGCTTTGAATGGGGTTGAAGTATTTATGAATGCTAGTGGAAGTCATCACCAACTAAGAAAACTTGATGTTCGTCTTCGTGCTTTTATAGATGCTACTCATACTCGTGGTGGAGTTTACATGTACAGTAATCACCAGGGTTGTGACGGTGGCCGTCTTTATTATGATGGTTGTGCTTGTGTTGTTATGAACGGCGAGCTTGTAGCTCAAGGGTCGCAGTTTTCCCTGAAGGATGTCGAGGTTGTGGTTGCCAGTGTAGATCTTGATGCGGTTGCTAGTCTTAGAGGATCTATAAGCAGCTTTCAAGAACAAGCAAGCTATAAGACGACCGTTCCTTCTGTGGCAGCCCCATATAGTCTATGTCAGCCATTCAATCTCAAAATTTCTCTTTCGAGTCCCCTTGAGATTAACTATCACTGCGCGGAAGAGGAAATAGCCTATGGACCTGGTTGCTGGTTGTGGGACTATTTAAGACGAAGCGGAGCTTCTGGATTTTTGCTTCCTCTTTCTGGTGGAGCTGATAGTTCATCTGTTGCAGCCATAGTGGGCTGCATGTGCCAGCTTGTCGTAAAAGATATTGCGAAGGGAGACGAACAAGTTAAAGCTGATGCAATACGGATTGGACGTTATGCTGATGGAGAGTTCCCGACTGATAGTAAAGAATTCGCCAAACGAATTTTTTATACTGTATTTATGGGTTCTGAAAATAGTTCTGAAGCAACACGTACACGAGCAAAGGTTCTAGCAGACGAGATTGGTTCATGGCATCTTAATGTTTCCATAGACGGGATTGTTTCTGCACTTTTGTCTTTGTTCCAAACAGTTACTGGAAAACGTCCGCGGTATAAGTTAGATGGGGGATCTAACGTCGAAAATTTAGGCCTGCAGAATATTCAAGCTCGAATCAGGATGGTTCTGGCTTTTATGTTTGCATCGCTCTTACCTTGGGTACATGGTAAATCTGGATTCTACCTTGTTCTGGGTAGCTCCAACGTCGACGAAGGATTGCGTGGTTACTTGACGAAGTACGATTGCAGTTCGGCAGATCTAAATCCAATTGGAAGCATCAGTAAGCAGGATCTTCGAGCTTTTCTTAGATGGGCTGCCACGCATCTTGGCTTCTCATCGTTGGCAGATATCGAAGCAGCTCCTCCCACAGCCGAGCTGGAGCCAATTCGTTCCAACTACAGCCAGTTGGATGAAGTTGACATGGGAATGACATATGAGGAGCTCTCAGTCTACGGAAGGCTGCGAAAAATTTTCCGTTGCGGTCCCGTGTCGATGTTCAAGAATCTCTGCTACCGTTGGGGTTCTAAGTTAACTCCGTCAGAGGTGGCCGAAAAAGTGAAACATTTCTTCAAGTACTACTCATTGAATCGACACAAAATGGTCGTTCTAACGCCATCTTATCACGCTGAGAGTTATTCCCCGGATGACAATCGGTACGATCTTCGTCAATTTCTGTACAACTCGAGGTGGCCATATCAGTTTCGAAAGATGGATAATCTTGTGAAGGAGTTGAATGGAGACAGTATTGCTATTAAGGAACCAAGTGGGATGGGGGTCGTAGCAGCAGGATCAGGGAACCCCAATGTTGGACTTTAG 2277 44.93 MSNPNSKPGSGSRTMSALQTSLNFRWSSVGGKAEESLIMRLLKVATCNLNQWAMDFDCNVKNIKESIDEAKRAGAVIRLGPELEITGYGCEDHFLELDTVMHAWECLKDILSGPLTDGILCSIGMPVIKDSERYNCQVLCFNRKIIMIRPKMWLANDGNYRELRWFTAWKLKDKLVDFQLPRDISEALSQTSVPFGYGYIQFLDTTVAAEVCEELFTPIPPHAELALNGVEVFMNASGSHHQLRKLDVRLRAFIDATHTRGGVYMYSNHQGCDGGRLYYDGCACVVMNGELVAQGSQFSLKDVEVVVASVDLDAVASLRGSISSFQEQASYKTTVPSVAAPYSLCQPFNLKISLSSPLEINYHCAEEEIAYGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKDIAKGDEQVKADAIRIGRYADGEFPTDSKEFAKRIFYTVFMGSENSSEATRTRAKVLADEIGSWHLNVSIDGIVSALLSLFQTVTGKRPRYKLDGGSNVENLGLQNIQARIRMVLAFMFASLLPWVHGKSGFYLVLGSSNVDEGLRGYLTKYDCSSADLNPIGSISKQDLRAFLRWAATHLGFSSLADIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKIFRCGPVSMFKNLCYRWGSKLTPSEVAEKVKHFFKYYSLNRHKMVVLTPSYHAESYSPDDNRYDLRQFLYNSRWPYQFRKMDNLVKELNGDSIAIKEPSGMGVVAAGSGNPNVGL 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5668834 5674101 + CmoCh02G009220.1 Cmo02g00922 376519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00922 758 CDD NAD_synthase 366 687 IPR003694 GO:0003952|GO:0004359|GO:0005737|GO:0009435
Cmo02g00922 758 Pfam Carbon-nitrogen hydrolase 43 319 IPR003010 GO:0006807
Cmo02g00922 758 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 356 699 - -
Cmo02g00922 758 PANTHER GLUTAMINE-DEPENDENT NAD(+) SYNTHETASE 39 758 - -
Cmo02g00922 758 SUPERFAMILY Carbon-nitrogen hydrolase 39 327 IPR036526 -
Cmo02g00922 758 Gene3D HUPs 365 732 IPR014729 -
Cmo02g00922 758 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 42 312 IPR003010 GO:0006807
Cmo02g00922 758 PIRSF NADS_GAT 39 720 IPR014445 GO:0003952|GO:0005524|GO:0009435
Cmo02g00922 758 Hamap Glutamine-dependent NAD(+) synthetase [nadE]. 42 718 IPR014445 GO:0003952|GO:0005524|GO:0009435
Cmo02g00922 758 PANTHER NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASE 39 758 IPR003694 GO:0003952|GO:0004359|GO:0005737|GO:0009435
Cmo02g00922 758 CDD GAT_Gln-NAD-synth 43 330 - -
Cmo02g00922 758 Pfam NAD synthase 376 636 IPR022310 -
Cmo02g00922 758 Gene3D - 37 341 IPR036526 -
Cmo02g00922 758 TIGRFAM nadE: NAD+ synthetase 446 638 IPR003694 GO:0003952|GO:0004359|GO:0005737|GO:0009435
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00922 K01950 E6.3.5.1, NADSYN1, QNS1, nadE; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] - csv:101207747 1367.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01352 Cmo-Chr15:9255241 Cmo02g00922 Cmo-Chr2:5668834 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g199 . . . . . . . . . . Cma02g00915 . Car02g00666 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00922 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004159 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00922 Cmo_Chr02 FPKM 48.147743 54.040104 22.412107 21.297682 22.709894 23.889612 23.039289 3.052191 3.160243 2.648979