Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00930 | ATGACTTTTCATGGAGGGGATTCGTATACGCAGTCTTGTGTTTCCGCTCAAGGTCGTGGAAGAGATGATCTGTACATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATATACCTCGAGTTGATGAGAAAGTCTTCTATTTCCCTCAGGGGCACATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTTCCTCGAAGATTCTCTGTCGCGTAATTCATATAGATCCGCTGGCAGATCATGAATCGGATGAGGTTTATGCGCAAATAACTTTGTTGCCGGAATCAAATCAAAGTGAGCCTAGAAGTTTAGATCCATGCCCTCCAGAACCTGTCAAACCAGTTGTTCACTCGTTCTGTAAGGTTTTAACTGCTTCTGATACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTAACGAGTGCTTACCTCCTTTGGTGAGACCTGACATGACTCAGGCTACACCAACTCAGGATCTGGTCGCCAAGGATCTTCATGGATATGAGTGGCGATTTAAACATATTTTTAGAGGTCAGCCACGAAGGCACCTGCTAACGACGGGGTGGAGTACATTTGTTACTTCTAAAAGATTAACTGCTGGAGATTCCTTTGTATTCTTGAGCTTGAGCATGTATGCTAATGATTGCAATTTTTTCCTTCTAACATTGCTTGAAAAACTTTATAATGACCTCTACGCAAAATTAGCATGCAAGTACTTGTTTTTATGGACTCTTTGGGGAGACAATGGACAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCAACAGCAAAGCAGCATGCCACCATCTGTGATATCGAGTCAGAGCATGCACCTAGGAGTGCTCGCAACTGCATCTCATGCTGTTACAACCCAAACCCGTTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAGTACTTGGAAGCAGTCAATTATAAATTTTCTCTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGGAGATATTTCACCTCATTGGGCCAATTCAAGCTGGAGATCACTAAGGGTTCAATGGGATGAGCAAACATCTATTCTAAGACCTGACAGGGTTTCGCCTTGGGATATAGAACCACTCACGTCTTCAGCGGTCTCAAGTTTGTCTCAACCCGTTTCAAAAAACAAAAGGCCTCGACAATCAACTGAAACTCCAGCTCATGATGGTGCTGATTTGACTAAGTCAGCACATTGGGATTCTGGATTGGCACAATCTCATGATGGTAAACAGTTCGGTAATGCAACTGAGAGCAGATTAGGTGAAAATAATGAACTGTGTCATCATAGTGAGATAGATACTATCAGCAACAGCACATGTGTCTCAAGAACACAGACTGATGGGACCTGGCTATTTTCTACCCAATCCAATGGTTATAAAGACCCAGTAAATGACACAGCACAGGATTATAAAACTGTACCTGTCTGTGGTTGGTCTATTCTGTCAGGACCTTCAAAGGTAAGTGATGATCAAATACTTGATCCCACTGAAAATGGGAGGAAAGGCGAAACTGTAGCTAGTTGTAGATTGTTTGGCATTGATCTCAATCATTTGGCTAAACTTCCTGCTGAGAAAGCATCTTCTCAACCGAGCAGTATGTCTAGTCACACAGATGGGCGCATCAGCACCTTGTCAGTGGCTCAGTCCGAATCAAAATCTGACAACATAGAGGCCTCTATAGATAGAAAGTTAGAGCCATTACAAGCATCTCTGAAGGAGACTCAAAGCTATTCTTTGTTACTTATGTTTGGTGTCCAATTGTGCCAAAAGGTTCACATGCATGGAATGGCCGTGGGTAGGGCAGTAGACTTAACCATCTTAGAAGGCTATGACCAATTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTCTGCACGAGATAAGTGGGAGATTGTATATACTGACGATGAAGGGGATATGATGCTTGTTGGAGACGATCCATGGGAAGAATTCTGTAACATGGTGAGAAGAATTTTTATATGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAGGAAGCAAGCAGCTGGCGTCAATAGAAGTTGAAGGGGCAGTAGTAATCCCCGACTCCCCTGCAATTTGA | 2205 | 43.27 | MTFHGGDSYTQSCVSAQGRGRDDLYMELWRACAGPLVDIPRVDEKVFYFPQGHMEQLEASTNLELNKRIPLFNLSSKILCRVIHIDPLADHESDEVYAQITLLPESNQSEPRSLDPCPPEPVKPVVHSFCKVLTASDTSTHGGFSVLRKHANECLPPLVRPDMTQATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLTAGDSFVFLSLSMYANDCNFFLLTLLEKLYNDLYAKLACKYLFLWTLWGDNGQLRVGVRRRAQQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNYKFSLGMRFNMSFEGEDSPERRFSGTIIGAGDISPHWANSSWRSLRVQWDEQTSILRPDRVSPWDIEPLTSSAVSSLSQPVSKNKRPRQSTETPAHDGADLTKSAHWDSGLAQSHDGKQFGNATESRLGENNELCHHSEIDTISNSTCVSRTQTDGTWLFSTQSNGYKDPVNDTAQDYKTVPVCGWSILSGPSKVSDDQILDPTENGRKGETVASCRLFGIDLNHLAKLPAEKASSQPSSMSSHTDGRISTLSVAQSESKSDNIEASIDRKLEPLQASLKETQSYSLLLMFGVQLCQKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLSARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKKMSSGSKQLASIEVEGAVVIPDSPAI | 734 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5703867 | 5709822 | - | CmoCh02G009300.1 | Cmo02g00930 | 376527 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00930 | 734 | Gene3D | - | 621 | 711 | - | - | |
Cmo02g00930 | 734 | MobiDBLite | consensus disorder prediction | 560 | 589 | - | - | |
Cmo02g00930 | 734 | MobiDBLite | consensus disorder prediction | 404 | 431 | - | - | |
Cmo02g00930 | 734 | ProSiteProfiles | PB1 domain profile. | 623 | 704 | IPR000270 | GO:0005515 | |
Cmo02g00930 | 734 | MobiDBLite | consensus disorder prediction | 562 | 589 | - | - | |
Cmo02g00930 | 734 | SMART | B3_2 | 129 | 239 | IPR003340 | GO:0003677 | |
Cmo02g00930 | 734 | PANTHER | AUXIN RESPONSE FACTOR 9 | 257 | 721 | - | - | |
Cmo02g00930 | 734 | PANTHER | AUXIN RESPONSE FACTOR 9 | 19 | 219 | - | - | |
Cmo02g00930 | 734 | SUPERFAMILY | DNA-binding pseudobarrel domain | 120 | 223 | IPR015300 | - | |
Cmo02g00930 | 734 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 257 | 721 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cmo02g00930 | 734 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 19 | 219 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cmo02g00930 | 734 | Pfam | Auxin response factor | 296 | 374 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cmo02g00930 | 734 | SUPERFAMILY | CAD & PB1 domains | 619 | 699 | - | - | |
Cmo02g00930 | 734 | CDD | B3_DNA | 127 | 218 | IPR003340 | GO:0003677 | |
Cmo02g00930 | 734 | ProSiteProfiles | B3 DNA-binding domain profile. | 129 | 239 | IPR003340 | GO:0003677 | |
Cmo02g00930 | 734 | Pfam | B3 DNA binding domain | 129 | 219 | IPR003340 | GO:0003677 | |
Cmo02g00930 | 734 | Pfam | AUX/IAA family | 623 | 659 | IPR033389 | - | |
Cmo02g00930 | 734 | Pfam | AUX/IAA family | 669 | 701 | IPR033389 | - | |
Cmo02g00930 | 734 | Gene3D | - | 126 | 272 | IPR015300 | - | |
Cmo02g00930 | 734 | Gene3D | - | 331 | 405 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00930 | Cmo16g00585 | CCT | |
Cmo02g00930 | Cmo16g00585 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00930 | Cmo-Chr2:5703867 | Cmo16g00585 | Cmo-Chr16:2822610 | 0 | dispersed | |
Cmo06g00003 | Cmo-Chr6:8714 | Cmo02g00930 | Cmo-Chr2:5703867 | 1.17E-69 | transposed | |
Cmo15g01361 | Cmo-Chr15:9303666 | Cmo02g00930 | Cmo-Chr2:5703867 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9264 | PF02362 | B3 | 6.90E-19 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00930 | K14486 | - | csv:101209208 | 1145.57 |