Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00930 ATGACTTTTCATGGAGGGGATTCGTATACGCAGTCTTGTGTTTCCGCTCAAGGTCGTGGAAGAGATGATCTGTACATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATATACCTCGAGTTGATGAGAAAGTCTTCTATTTCCCTCAGGGGCACATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTTCCTCGAAGATTCTCTGTCGCGTAATTCATATAGATCCGCTGGCAGATCATGAATCGGATGAGGTTTATGCGCAAATAACTTTGTTGCCGGAATCAAATCAAAGTGAGCCTAGAAGTTTAGATCCATGCCCTCCAGAACCTGTCAAACCAGTTGTTCACTCGTTCTGTAAGGTTTTAACTGCTTCTGATACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTAACGAGTGCTTACCTCCTTTGGTGAGACCTGACATGACTCAGGCTACACCAACTCAGGATCTGGTCGCCAAGGATCTTCATGGATATGAGTGGCGATTTAAACATATTTTTAGAGGTCAGCCACGAAGGCACCTGCTAACGACGGGGTGGAGTACATTTGTTACTTCTAAAAGATTAACTGCTGGAGATTCCTTTGTATTCTTGAGCTTGAGCATGTATGCTAATGATTGCAATTTTTTCCTTCTAACATTGCTTGAAAAACTTTATAATGACCTCTACGCAAAATTAGCATGCAAGTACTTGTTTTTATGGACTCTTTGGGGAGACAATGGACAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCAACAGCAAAGCAGCATGCCACCATCTGTGATATCGAGTCAGAGCATGCACCTAGGAGTGCTCGCAACTGCATCTCATGCTGTTACAACCCAAACCCGTTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAGTACTTGGAAGCAGTCAATTATAAATTTTCTCTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGGAGATATTTCACCTCATTGGGCCAATTCAAGCTGGAGATCACTAAGGGTTCAATGGGATGAGCAAACATCTATTCTAAGACCTGACAGGGTTTCGCCTTGGGATATAGAACCACTCACGTCTTCAGCGGTCTCAAGTTTGTCTCAACCCGTTTCAAAAAACAAAAGGCCTCGACAATCAACTGAAACTCCAGCTCATGATGGTGCTGATTTGACTAAGTCAGCACATTGGGATTCTGGATTGGCACAATCTCATGATGGTAAACAGTTCGGTAATGCAACTGAGAGCAGATTAGGTGAAAATAATGAACTGTGTCATCATAGTGAGATAGATACTATCAGCAACAGCACATGTGTCTCAAGAACACAGACTGATGGGACCTGGCTATTTTCTACCCAATCCAATGGTTATAAAGACCCAGTAAATGACACAGCACAGGATTATAAAACTGTACCTGTCTGTGGTTGGTCTATTCTGTCAGGACCTTCAAAGGTAAGTGATGATCAAATACTTGATCCCACTGAAAATGGGAGGAAAGGCGAAACTGTAGCTAGTTGTAGATTGTTTGGCATTGATCTCAATCATTTGGCTAAACTTCCTGCTGAGAAAGCATCTTCTCAACCGAGCAGTATGTCTAGTCACACAGATGGGCGCATCAGCACCTTGTCAGTGGCTCAGTCCGAATCAAAATCTGACAACATAGAGGCCTCTATAGATAGAAAGTTAGAGCCATTACAAGCATCTCTGAAGGAGACTCAAAGCTATTCTTTGTTACTTATGTTTGGTGTCCAATTGTGCCAAAAGGTTCACATGCATGGAATGGCCGTGGGTAGGGCAGTAGACTTAACCATCTTAGAAGGCTATGACCAATTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTCTGCACGAGATAAGTGGGAGATTGTATATACTGACGATGAAGGGGATATGATGCTTGTTGGAGACGATCCATGGGAAGAATTCTGTAACATGGTGAGAAGAATTTTTATATGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAGGAAGCAAGCAGCTGGCGTCAATAGAAGTTGAAGGGGCAGTAGTAATCCCCGACTCCCCTGCAATTTGA 2205 43.27 MTFHGGDSYTQSCVSAQGRGRDDLYMELWRACAGPLVDIPRVDEKVFYFPQGHMEQLEASTNLELNKRIPLFNLSSKILCRVIHIDPLADHESDEVYAQITLLPESNQSEPRSLDPCPPEPVKPVVHSFCKVLTASDTSTHGGFSVLRKHANECLPPLVRPDMTQATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLTAGDSFVFLSLSMYANDCNFFLLTLLEKLYNDLYAKLACKYLFLWTLWGDNGQLRVGVRRRAQQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNYKFSLGMRFNMSFEGEDSPERRFSGTIIGAGDISPHWANSSWRSLRVQWDEQTSILRPDRVSPWDIEPLTSSAVSSLSQPVSKNKRPRQSTETPAHDGADLTKSAHWDSGLAQSHDGKQFGNATESRLGENNELCHHSEIDTISNSTCVSRTQTDGTWLFSTQSNGYKDPVNDTAQDYKTVPVCGWSILSGPSKVSDDQILDPTENGRKGETVASCRLFGIDLNHLAKLPAEKASSQPSSMSSHTDGRISTLSVAQSESKSDNIEASIDRKLEPLQASLKETQSYSLLLMFGVQLCQKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLSARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKKMSSGSKQLASIEVEGAVVIPDSPAI 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5703867 5709822 - CmoCh02G009300.1 Cmo02g00930 376527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00930 734 Gene3D - 621 711 - -
Cmo02g00930 734 MobiDBLite consensus disorder prediction 560 589 - -
Cmo02g00930 734 MobiDBLite consensus disorder prediction 404 431 - -
Cmo02g00930 734 ProSiteProfiles PB1 domain profile. 623 704 IPR000270 GO:0005515
Cmo02g00930 734 MobiDBLite consensus disorder prediction 562 589 - -
Cmo02g00930 734 SMART B3_2 129 239 IPR003340 GO:0003677
Cmo02g00930 734 PANTHER AUXIN RESPONSE FACTOR 9 257 721 - -
Cmo02g00930 734 PANTHER AUXIN RESPONSE FACTOR 9 19 219 - -
Cmo02g00930 734 SUPERFAMILY DNA-binding pseudobarrel domain 120 223 IPR015300 -
Cmo02g00930 734 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 257 721 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo02g00930 734 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 219 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo02g00930 734 Pfam Auxin response factor 296 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo02g00930 734 SUPERFAMILY CAD & PB1 domains 619 699 - -
Cmo02g00930 734 CDD B3_DNA 127 218 IPR003340 GO:0003677
Cmo02g00930 734 ProSiteProfiles B3 DNA-binding domain profile. 129 239 IPR003340 GO:0003677
Cmo02g00930 734 Pfam B3 DNA binding domain 129 219 IPR003340 GO:0003677
Cmo02g00930 734 Pfam AUX/IAA family 623 659 IPR033389 -
Cmo02g00930 734 Pfam AUX/IAA family 669 701 IPR033389 -
Cmo02g00930 734 Gene3D - 126 272 IPR015300 -
Cmo02g00930 734 Gene3D - 331 405 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00930 Cmo16g00585 CCT
Cmo02g00930 Cmo16g00585 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00930 Cmo-Chr2:5703867 Cmo16g00585 Cmo-Chr16:2822610 0 dispersed
Cmo06g00003 Cmo-Chr6:8714 Cmo02g00930 Cmo-Chr2:5703867 1.17E-69 transposed
Cmo15g01361 Cmo-Chr15:9303666 Cmo02g00930 Cmo-Chr2:5703867 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9264 PF02362 B3 6.90E-19 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00930 K14486 - csv:101209208 1145.57