Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00931 ATGGGCTGCACGTCTTCTAAGCGAATTGAGGCCACCGTTGATGTGTACCGGCCGGCTCCGGCGAGCTTTGCAGTGTTCGATATAAACGCCATCGAGGAGCCTTGGGTTAAAGTGGTGGAGGAGCCACAATCTCCAGCATCTCCCGTGAAGGAGGAGAAAGCTGCGATTGTTCCGGTTCCCATCCTTGAGAAGCTCAGTAGTTTGGAATCTGAGACTCCTCACTCATGGGATGAGGTCAGTAAGGCTCTTGAAGATCTCAAACCCGCCCTTCAACGCGAGCTCCAACCTCCTCCTAAGCCCGTTACTCCCAACCAAGAACCGCCGCCGTCGAAACCCGCCGCAGCCGCCGTCGGTAAACAAGCCCCACGCAAGAGCTCCAGCTTTCACACGGTGGCAGAGCTCGACTCCAAGTTAACGTCTTCCACCAAGCCGGCCGCCAAGTCTTTCAGAAACGGACCGACAAAACCCGAGCCAACAATACCCGAGCCAAGAACCGGCGATCCGGACCGGTTCAGGTCCGTTAAAGAGAACATTTTTCTATTAAGGGACAGACAGGAGAGGGAAAGAGAGGGGCAGAAGCCGGTCCGGTTCGACCCACTAAGTGACTTCCCAGAGAAGTGCCCGCCGGGAGGAGCGGAAACGGTGGTGCTGTATACAACATCGTTGAGAGGCGTACGGCGGACGTTCGAGGACTGTAACAGAGTGAAGTCGGTGCTGGAGTTGCAGCAGGTCGTGGTCGATGAGCGTGACGTGGCATTGCACGGTGACTTTTTGAAGGAGCTCAAGGAGTTGCTCGGCGACGAGGCGACCGTGCCGAGAATGTTTGTGAAGGGAAGGTACATCGGAGGGGCAGATGAAATAGTAGCCCTGAACGAGATGGGGAAGCTTCGTAGGATACTACGGCGAGCGGCGGTGGAGACGGGAGCAGGGCGGCAAGGGTGCGAAGGGTGCGGCGGGGCAAGATTTGTGCCATGTTTGGAGTGTGGAGGAAGCTGTAAAGTGATAATTGGGGAGAGAAAGGAGAGATGTGGAGGGTGTAATGAAAATGCAAGAAATGCTTGTGGAATTGGGATAGAAAGTTGGGAAAATATAGAAAAGGGGGAATTATTCATTAATGATCATGTCCTTACTCCTTGGATTCTAATCAGTTTCAACACTTATTTTACTGGTTTTGTGTGTCTAAGTAAGACACGAGGGAGTAGCGTTGTAACATTGTGCAATGGGGTTACGATGCTACAATTATTAAGCCAGAATGAAGCAAAGGCTCCCAGTTCGGGCAGCTACAGAGCTAGTTCCCGTATAATAGGACGCGCGCCAAGCCGTTTTGCGATTCTTTCCTGTGACGGCGTTTTCTCCCCTGTTGAGCGACAGAGAGGATTAGCGGTTGATTTTCGAGCGGTTTTTATCACAGGATCAGTGACGAAGGTGTTTCAGGGGCGTTGGGAGATTTGTTTTGAGTTGCTTTGA 1467 52.62 MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPWVKVVEEPQSPASPVKEEKAAIVPVPILEKLSSLESETPHSWDEVSKALEDLKPALQRELQPPPKPVTPNQEPPPSKPAAAAVGKQAPRKSSSFHTVAELDSKLTSSTKPAAKSFRNGPTKPEPTIPEPRTGDPDRFRSVKENIFLLRDRQEREREGQKPVRFDPLSDFPEKCPPGGAETVVLYTTSLRGVRRTFEDCNRVKSVLELQQVVVDERDVALHGDFLKELKELLGDEATVPRMFVKGRYIGGADEIVALNEMGKLRRILRRAAVETGAGRQGCEGCGGARFVPCLECGGSCKVIIGERKERCGGCNENARNACGIGIESWENIEKGELFINDHVLTPWILISFNTYFTGFVCLSKTRGSSVVTLCNGVTMLQLLSQNEAKAPSSGSYRASSRIIGRAPSRFAILSCDGVFSPVERQRGLAVDFRAVFITGSVTKVFQGRWEICFELL 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5709856 5716461 - CmoCh02G009310.1 Cmo02g00931 376528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00931 488 MobiDBLite consensus disorder prediction 123 148 - -
Cmo02g00931 488 Gene3D Glutaredoxin 211 306 - -
Cmo02g00931 488 MobiDBLite consensus disorder prediction 93 110 - -
Cmo02g00931 488 Coils Coil 488 488 - -
Cmo02g00931 488 MobiDBLite consensus disorder prediction 185 200 - -
Cmo02g00931 488 CDD GRX_GRX_like 215 349 - -
Cmo02g00931 488 PANTHER GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTEIN CG12206-RELATED 1 350 - -
Cmo02g00931 488 SUPERFAMILY Thioredoxin-like 208 301 IPR036249 -
Cmo02g00931 488 Pfam Glutaredoxin 215 281 IPR002109 -
Cmo02g00931 488 MobiDBLite consensus disorder prediction 91 170 - -
Cmo02g00931 488 MobiDBLite consensus disorder prediction 185 204 - -
Cmo02g00931 488 ProSiteProfiles Glutaredoxin domain profile. 203 307 - -
Cmo02g00931 488 PANTHER F1N19.7 1 350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00931 K17479 GRXCR1; glutaredoxin domain-containing cysteine-rich protein 1 - csv:101208965 563.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00931 Cmo-Chr2:5709856 Cmo15g00542 Cmo-Chr15:2571030 4.48E-42 dispersed
Cmo02g00931 Cmo-Chr2:5709856 Cmo14g00310 Cmo-Chr14:1430613 2.24E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g159 . . . . . . . . . . Cma02g00924 . Car02g00672 . . . . . . . . . . . . . . . . . . Cone8ag0238 Cone12ag0601 . . . . . . . . . . . . . . . Cmo02g00931 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012144 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00931 Cmo_Chr02 FPKM 12.771438 14.001679 13.685217 12.940142 8.967607 8.047517 9.239998 19.071829 17.535738 18.600416