Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00933 ATGGAGGTTTCGCGAGATGATCTGTTGTGCATTAGATACCGGAGTAAGAAGAGGGCTAGAAATAGCAAGAAAAATCATAACAGTGGCGGAATCGTCGTCAACAACAATCAAAACCAAAACAACTGCGTTAACAAGAGGACGAGTTTATACGACTTCTTCTGGTCTTTTCTCTTTTCCCTCTCTTGTTTCGTCTGCTTGTTCTATTCCAAGCTCGTCCTTGGTTATGGTGATTCTGGAGATTCTTCTTCTGTGAATAGAAGCGCTATTTGCCCTAGTCCTGGAAATCAGAAGCTAGATGATCACGCCTATTCATCCATAGCAAATGGAAGCAGTTGTATGAACTCTGGATCGTCTGAACTCAATGTGTCAATGAACTGTAATGAATCCTATGTTCATCACAACTATGCAAATTCAAATTACTCACTTTCAGAGTCAAAGGTATTTGAAGTAGCAGTCTTGAGTGCACTTGGATATCCATCTTTAATGTGCAAAGTACAACAGTCAGAGAAGAAACCAAACTCAACAGAACATCAGGAAGGTCCTAGTGGCAGAAGTGCTCACCCCACATATCTTAATTTGGACGAATTTCGCAACATTACGATGAAAGATAAAGAAGGCGACATGCCTGATCAATTAGTTAACATTACTCATCGGCTTGAACCGGATGGATCAGATTACAACTATGCATCTTCATCGAAAGGTGCAAAGGTTGTTGCTCATAACAAGGAAGCAAAAGGAGCATGTAATATATTGGGGAAAGACCATGATAAGTATCTGAGAAACCCTTGTTCTGTGGGAGAAAAGTATGTTGTGATTGAGCTCTCAGAAGAGACCTTAGTCGATGCTGTGATTGAACATTATTCTTCTAATTTCAAGGCATTCAATTTGTCTGGCAGTTTGAGCTATCCAACGGAGACATGGCCTAAATTGGGAAACGTTGTTGCTGCCAATGTAAAACATGCTCAAGTCTTCAAGCTTCCTGAACCAAAATGGGTTAGGTACTTAAAGTTGGATGTTCTTAGTCATTATGGATCAGAGTTTTACTGCACAATGAGTATAGTAGAGGTTTATGGTGTGGATGTCATGGAGAGGATGCTTGAAGATCTCTTTGTCACCTCTTCAGACGAAGAGCCTAATTCAACCGTGTTGACTTCTTCAAATCAGATGTTGGTTCAGTTAATGAAATAG 1188 40.24 MEVSRDDLLCIRYRSKKRARNSKKNHNSGGIVVNNNQNQNNCVNKRTSLYDFFWSFLFSLSCFVCLFYSKLVLGYGDSGDSSSVNRSAICPSPGNQKLDDHAYSSIANGSSCMNSGSSELNVSMNCNESYVHHNYANSNYSLSESKVFEVAVLSALGYPSLMCKVQQSEKKPNSTEHQEGPSGRSAHPTYLNLDEFRNITMKDKEGDMPDQLVNITHRLEPDGSDYNYASSSKGAKVVAHNKEAKGACNILGKDHDKYLRNPCSVGEKYVVIELSEETLVDAVIEHYSSNFKAFNLSGSLSYPTETWPKLGNVVAANVKHAQVFKLPEPKWVRYLKLDVLSHYGSEFYCTMSIVEVYGVDVMERMLEDLFVTSSDEEPNSTVLTSSNQMLVQLMK 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5718062 5719758 - CmoCh02G009330.1 Cmo02g00933 376530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00933 395 Pfam Sad1 / UNC-like C-terminal 240 359 IPR012919 -
Cmo02g00933 395 PANTHER SUN DOMAIN-CONTAINING PROTEIN 5 29 390 - -
Cmo02g00933 395 ProSiteProfiles SUN domain profile. 205 361 IPR012919 -
Cmo02g00933 395 PANTHER MEMBRANE PROTEIN CH1 RELATED 29 390 IPR045120 GO:0016020
Cmo02g00933 395 MobiDBLite consensus disorder prediction 167 189 - -
Cmo02g00933 395 SUPERFAMILY Galactose-binding domain-like 267 357 IPR008979 -
Cmo02g00933 395 Gene3D - 217 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00933 - - - cmos:111459377 770.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00933 Cmo-Chr2:5718062 Cmo09g01250 Cmo-Chr9:10767588 3.95E-70 dispersed
Cmo02g00933 Cmo-Chr2:5718062 Cmo15g01364 Cmo-Chr15:9323906 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g155 . . . . . . . . . . Cma02g00925 . Car02g00673 . . . Cpe05g00787 . . . . . . . . . . . . . . . . . . . Csa05g00188 . . . . . . . . . . . Cmo02g00933 . . . . . . . . . . . . . . Cla01g00171 Cam01g0175 Cec01g0173 Cco01g0176 Clacu01g0171 Cmu01g0169 Cre09g2336 Lsi09g00159 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012901 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 0 0 0 1 1 1 1 1 1 0 1 3 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00933 Cmo_Chr02 FPKM 0.563063 1.210509 0.386328 1.092103 0.332691 1.558368 0.086838 0.123427 0.22822 0.364013