Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00934 ATGATGGAGGAGGGTTTGGTTCCAAGTGGGAGAACGGAGGAAGAAACTGCAGAGGTTTACGATATCAATTATGAGGTTTCTGATGAGGTGGAAAGATGTGGGATATGCATGGATGTCATTGTTGATAGGGGTGTTCTGGACTGCTGCCAGCACTGGTTCTGTTTTGTATGCATTGACAACTGGGCAACTATTACAAACCTTTGTCCACTTTGCCAGAAAGAATTTCAGCTCATCACATGTGTTCCAGTGTATGATACTATTGGGAGCAACAAAGTAGATGAAGAATCATTTAGCAGAAATGACGATTGGTGCTTTGAGGGAAAGAGTAACATCTCTTTTCCATCATACTATATTGACGAGAATGCAGTTATCTGCTTGGATGGTGATGGCTGTAAGATTAGAAATGGATCTGGGTTTACTGAAGGAGAATCTGATCTTGATACCTCAATTGCTTGTGACTCTTGTGATACATGGTATCATGCATTCTGTGTTGATTTTGATCCTGAAGATACAACTGAAAGTACATGGTTATGCCCAAGATGTGGGGCTATTGATCAGGAAACTTCTATCAATGATTCAGTTCTGAAGTTTAACAGTGACTTTGATTCAATGAATGCTTCGGTTCCACAAAGTTTTTCCAGAAAGGTGTCTGTATCCGTTGCTGATACTGGAGAGACAGCATTGGTTGTCTCAATGATTGGAGGAAATCAGGTTAATGAAGTACAAACTGATAACACTTTGTCAACCGATGAAATTGAAAAAAATAAAAAAATTGAAAATTTCATATTGGCTTCGGAAGCTAGTAGGCCAAATGCCACTGTATCACCATTGGTGAATACTCTCGTTCTGCCAGCCCCATCAATGGAAATTACTTCTGCTATTCCAGCACTTGGAGACAAAGAATTGGAACTTTCTTTGTCACATGATACTCCCATCAGTTTTCATTATGATTCCCCTACAGATGTTGGGTTGAAAACAAGTGCTGATGAAATTAAGACCGAGTCAAGTAGCCTTGAAAGCACCAGAAGTTCTTCAAATATATCCCACCCTGTAAACAAAATGTCTAAAGATGAATTGAGCATGGGTCTTCATCTTGGTTTATCTGTGGGCACATTCTTGTCTGTTGATTACTTGAATGATGAAAATGGGGATCGAAGTGTTCACGTTAAGCCGGAGTTGTTTTCTTCAGAAGGACACTTGTTACAAGTTGATAATATCGCATCTCAAACCACCCCGGAAGCATCTATACTTGTTGGTGTAAAGAGGAAACGCACAGATTGCAGTGATCACATCCAGAAGACTGCTGATAATGGAGGTGATAAAGCCAATTCTGATATAAAACTTGTTCTGGGGAAGAATCAACCAGTTCCTTCTAAAAATGATGTGGAGCTAACTGAGCAAGATGATACTGCAAAGAGTTTGGCTAGGCCATTAGTTCCTACAGAAGCCAGCTTGAAGCGAATATCAAGAAAGAAAGGTGTCAATGCTGATATAATGAGTATAGTTCGGGGCCGAAACCGCAGGCCCCCTCCAGGAAGGGGGGCATGCTCAAATTCTAATGATGAAGAGTTGGATGAGCGAGAAAATTTGACTGGTTTGAGAGTCAAAAAGATCATGAGAAGAGCTGGCGAGGATCAGGAATCATCCATGCTAGTTCAGAAACTAAGAAATGAAATAAGAGAAGCAGTTCGCAACAAATGCGCAAAAGATTTTGGGGAAAACCTTTTGGATTCTAAGCTACTTGATGCGTTCAGGGCTGCAATATCAGGCCCTAAAACCGAGACTCAGAAAAGATTATCAGCTTTGGCTGTGAAGGCGAAAAAATCATTATTGCAAAAGGGGAAAATACGTGAGAGTCTGACAAAGAAAATATATGGGGCTACTAATGGAAGAAGGAAGCGTGCTTGGGACCGAGACTGTGAAATTGAATTCTGGAAGCATCGTTGCATAAGAGTGAGAAAGCCCGAAAAGATTGCAACTTTGAAATCCGTCCTTGACCTCTTAAGAAATGGTCCGAGTCCAGATGCAAAACAAGATTCTGAAGGCCAGCCCACAAATCCGATTCTTTCTCGATTATATGTAGCAGATACATCCGTCTTCCCACGGAATAATGACATCAAGCCTCTCTCGGCTTTCAAATCTTCCTCTTCTTTGGATCAGAAGAAAGATCCACTCACAGGGACTAGTAAGGTTCCGACGAAGGCTGGTATTCCTCCTCTAGCAGTAAATGCAGGGAATAGTTGTTCCGTGTCTGCCTCAAAGAGTGCTGCGGGTTCTAGTAAAGGAAATCATAGTGGAAACTCAGAAGCATCAGTTGGTTCTAAGATTAGACCACAGAATACTGTTTCTTCTACATCCAATAATGCAATTGATAAAAGAAAATGGGCCCTAGAAGTTCTTGCTAGGAAAACTGGTGATGGTTCCAGTGCAGCAAACAAAAAGGACGAAGACTTGGCTGTGCTTAAAGGAAATTATCCATTGCTAGCTCGGCTACCAATAGACATGAGACCAAAATTGGAACCCAGTCGCCACAATAAAATTCCCATGTCAGTAAGGCAGGCTCAGCTTTACCGCCTGACGGAGCAGTTCTTGAAGAAAACAAATTTGACGGTCATGCGCAGAACAGCAGAGACAGAGTTGGCCGTTGCAGATGCCATTAACATAGAAAAGGAGGTTGCTGATAGGTCAAACAGCAAAGTTGTATATCTTAATCTTTGTTCTCAGGAGATATTGCATCGCACTGACACTGGCAGATTAAATACAGCAGCAGCAGATTTGGATTCCTCATTCCAGGCAAATGATCAGATTGATGGAACTGAACTAGCCACTCATCCAGAAACAGATCCTGAAGTTCAAGAAGCACTAAGAAATGCAGGTCTTTTATCTGATTCACCTGTGAGTAGCCCTCCACACAGAACTGAAGTCGATGATGATGATGCCCCAATGAAAGACTTGCAAGACGATGAACCTGAAAATGTAATAGAAATGGATGACCATCCAGATTTGGATATCTATGGTGATTTTGAGTACGATCTAGAAGAAGAAAGCTGCTTCACCACGAAAGCTACCACCAAGGTTTTGAAACCACCAGATGAAGGCGAATCAAAATTGAAAGTTATTCTTTCCACCCTAAACACTGAAAGTTCGATTCAGGCGTCAGATGCCGAAAAGTCTGAGGGAACGGAGAGTGTTGAACTTCTGAAGGATGCTTCTTGTTTGCCGAAAAATGAAACTAATGTGGAGGCCGGAACAGCCCCTTCAGAGGGTGAGAATGAAGGCTCTGTTGCTGTTCCTCTGAATAGTACCGAAGTTGAAGAACCTTCCTTGGCAGAATATGAAGAACTCTATGGACCTGACACAGAGCCACAAATTAAGAATCTTCCAGGTGAAACTCCAACAGACGAGCGTTGTGTGCCTACTCCAGCATTTGGTTCCGAGCAGAAAGATTCTTCCAATGATGGAAGTTCTGTGCTAATTCAAGATGGAAATGAATCGGACATTAAACGTGAGGAGAGTGTAAAAGGAGCAGCTGCCACCACTGTTTCTCCAATCCCCACTTCTGGAGAGGGTTCTCCCCACAAGAAGGGGAAATCCAATGCTGATGACAATAAGCAGTCTGATAGCAACAACTCTGTAGCTAAGAAGGTCGAAACATACATCAAGGAGCACGTCCGACCTCTGTGCAAGAGTGGGATCATAACACCCGAACAATACAGATGGGCAGTCCAAAAAACCACCGAGAAGGTCATGAAGTACCATTCCAAAGATAAGAATGCAAATTTTCTTATCAAAGAGGGTGAAAAGGTGAAGAAGCTTGCAGAACAGTATGTAGAATCAGCACAGCGGAAGGGCGAATCCGACATGGGAGTTCCATATTCAGTAAGCAACTATGTTTCTGATTTAGCTCAAATTCTGTCCTCACACAATTGCAAATTGAAGCTCCATCTTTCTTGA 3954 42.24 MMEEGLVPSGRTEEETAEVYDINYEVSDEVERCGICMDVIVDRGVLDCCQHWFCFVCIDNWATITNLCPLCQKEFQLITCVPVYDTIGSNKVDEESFSRNDDWCFEGKSNISFPSYYIDENAVICLDGDGCKIRNGSGFTEGESDLDTSIACDSCDTWYHAFCVDFDPEDTTESTWLCPRCGAIDQETSINDSVLKFNSDFDSMNASVPQSFSRKVSVSVADTGETALVVSMIGGNQVNEVQTDNTLSTDEIEKNKKIENFILASEASRPNATVSPLVNTLVLPAPSMEITSAIPALGDKELELSLSHDTPISFHYDSPTDVGLKTSADEIKTESSSLESTRSSSNISHPVNKMSKDELSMGLHLGLSVGTFLSVDYLNDENGDRSVHVKPELFSSEGHLLQVDNIASQTTPEASILVGVKRKRTDCSDHIQKTADNGGDKANSDIKLVLGKNQPVPSKNDVELTEQDDTAKSLARPLVPTEASLKRISRKKGVNADIMSIVRGRNRRPPPGRGACSNSNDEELDERENLTGLRVKKIMRRAGEDQESSMLVQKLRNEIREAVRNKCAKDFGENLLDSKLLDAFRAAISGPKTETQKRLSALAVKAKKSLLQKGKIRESLTKKIYGATNGRRKRAWDRDCEIEFWKHRCIRVRKPEKIATLKSVLDLLRNGPSPDAKQDSEGQPTNPILSRLYVADTSVFPRNNDIKPLSAFKSSSSLDQKKDPLTGTSKVPTKAGIPPLAVNAGNSCSVSASKSAAGSSKGNHSGNSEASVGSKIRPQNTVSSTSNNAIDKRKWALEVLARKTGDGSSAANKKDEDLAVLKGNYPLLARLPIDMRPKLEPSRHNKIPMSVRQAQLYRLTEQFLKKTNLTVMRRTAETELAVADAINIEKEVADRSNSKVVYLNLCSQEILHRTDTGRLNTAAADLDSSFQANDQIDGTELATHPETDPEVQEALRNAGLLSDSPVSSPPHRTEVDDDDAPMKDLQDDEPENVIEMDDHPDLDIYGDFEYDLEEESCFTTKATTKVLKPPDEGESKLKVILSTLNTESSIQASDAEKSEGTESVELLKDASCLPKNETNVEAGTAPSEGENEGSVAVPLNSTEVEEPSLAEYEELYGPDTEPQIKNLPGETPTDERCVPTPAFGSEQKDSSNDGSSVLIQDGNESDIKREESVKGAAATTVSPIPTSGEGSPHKKGKSNADDNKQSDSNNSVAKKVETYIKEHVRPLCKSGIITPEQYRWAVQKTTEKVMKYHSKDKNANFLIKEGEKVKKLAEQYVESAQRKGESDMGVPYSVSNYVSDLAQILSSHNCKLKLHLS 1317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5720343 5735590 - CmoCh02G009340.1 Cmo02g00934 376531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00934 1317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 109 IPR013083 -
Cmo02g00934 1317 MobiDBLite consensus disorder prediction 744 787 - -
Cmo02g00934 1317 SUPERFAMILY FYVE/PHD zinc finger 146 182 IPR011011 -
Cmo02g00934 1317 MobiDBLite consensus disorder prediction 710 787 - -
Cmo02g00934 1317 Pfam Ring finger domain 32 72 IPR001841 -
Cmo02g00934 1317 PANTHER RING/U-BOX PROTEIN 103 1287 - -
Cmo02g00934 1317 MobiDBLite consensus disorder prediction 1047 1212 - -
Cmo02g00934 1317 MobiDBLite consensus disorder prediction 1144 1162 - -
Cmo02g00934 1317 MobiDBLite consensus disorder prediction 710 727 - -
Cmo02g00934 1317 SUPERFAMILY RING/U-box 27 78 - -
Cmo02g00934 1317 ProSiteProfiles Zinc finger PHD-type profile. 65 184 IPR019787 -
Cmo02g00934 1317 MobiDBLite consensus disorder prediction 329 352 - -
Cmo02g00934 1317 MobiDBLite consensus disorder prediction 452 473 - -
Cmo02g00934 1317 SMART PHD_3 130 182 IPR001965 -
Cmo02g00934 1317 MobiDBLite consensus disorder prediction 960 984 - -
Cmo02g00934 1317 MobiDBLite consensus disorder prediction 503 526 - -
Cmo02g00934 1317 PANTHER RING FINGER PROTEIN 41, 151 103 1287 - -
Cmo02g00934 1317 SMART ring_2 33 71 IPR001841 -
Cmo02g00934 1317 SMART ring_2 122 181 IPR001841 -
Cmo02g00934 1317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 188 IPR013083 -
Cmo02g00934 1317 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Cmo02g00934 1317 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Cmo02g00934 1317 Pfam PHD-finger 145 181 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00934 - - - cmax:111491518 2451.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00934 Cmo-Chr2:5720343 Cmo11g01298 Cmo-Chr11:8822347 2.00E-14 dispersed
Cmo02g00934 Cmo-Chr2:5720343 Cmo04g01903 Cmo-Chr4:9700720 9.43E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g153 . . . . . . . . . . Cma02g00926 . Car02g00674 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00934 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009633 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9265 PF00628 PHD 1.60E-08 CL0390 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00934 Cmo_Chr02 FPKM 11.908695 11.142103 18.554646 19.015675 12.756313 10.806939 11.487957 14.46602 16.1842 16.10137