Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00942 ATGGATACTGCTCAATGGCCTCAGGAGATTGTGTTGAAACCCAATGAAGAAATTGTGGCAAACACTTGCCCAAAAGCAAGTGGTGTATCTGGTGTTGAGAGGAAAATTAGACCACAAAAGGAACAAGCTTTGAATTGTCCGAGGTGCAATTCCAGCAATACTAAGTTTTGTTATTACAATAATTATAGCCTCACACAACCAAGGTACTTTTGCAAAACATGTCGAAGGTATTGGACTGAAGGTGGTTCCTTAAGAAACATTCCTGTCGGAGGTGGCTCAAGGAAGAACAAAAGGCCTTCTTCTTCTTCTACTACTACTTCTTCTAATTCTTCTTCTTCTTCTACTTTATCCACATCTCCCACTTGTTCTAATCTTCCTCCAAAGAACCCTCTTCATCTCCCTCAAACCCCTAAAACCACTCCTTCCCAAGATCTCAATTTGTCCTTTCCGTCGTCGAATCAGCTTTCGGCGATGGAGCTTCTCACCGGGATGGCGACCAACTCTAAGGGTTTAAATTGTTTCATTCCAATGCCTTCTATTGTCCCTGATCCTGCCTCCGTTTACGCATCGGGGTTTCCTGATCTCCATGATCAATTCAAGCCAAGCCTCGGATTCTCTCTCGATGGATATGGCGTTGTCCCGGGCGAGGCTAGCAATGGCGGGGGAGGGAGGGTTATGCAGCTGCCATTTGAGGATTTGAAGCAAGGGGCTAATGGAGTTGAGGAAGGGAAAGAGCATGGAGACTCAAGTGGGTATTGGAGTGGGATGTTGGGTGGAGGATCATGGTAA 789 45.75 MDTAQWPQEIVLKPNEEIVANTCPKASGVSGVERKIRPQKEQALNCPRCNSSNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSSSTTTSSNSSSSSTLSTSPTCSNLPPKNPLHLPQTPKTTPSQDLNLSFPSSNQLSAMELLTGMATNSKGLNCFIPMPSIVPDPASVYASGFPDLHDQFKPSLGFSLDGYGVVPGEASNGGGGRVMQLPFEDLKQGANGVEEGKEHGDSSGYWSGMLGGGSW 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5770498 5772171 + CmoCh02G009420.1 Cmo02g00942 376539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00942 262 Pfam Dof domain, zinc finger 42 98 IPR003851 GO:0003677|GO:0006355
Cmo02g00942 262 MobiDBLite consensus disorder prediction 85 149 - -
Cmo02g00942 262 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 5 258 - -
Cmo02g00942 262 MobiDBLite consensus disorder prediction 95 149 - -
Cmo02g00942 262 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 258 IPR045174 GO:0003700|GO:0006355
Cmo02g00942 262 MobiDBLite consensus disorder prediction 239 262 - -
Cmo02g00942 262 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
Cmo02g00942 262 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00942 Cmo15g01373 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00866 Cmo-Chr2:5272195 Cmo02g00942 Cmo-Chr2:5770498 1.43E-37 dispersed
Cmo02g00942 Cmo-Chr2:5770498 Cmo15g01079 Cmo-Chr15:7134402 5.25E-51 dispersed
Cmo15g01373 Cmo-Chr15:9357157 Cmo02g00942 Cmo-Chr2:5770498 6.98E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9266 PF02701 zf-Dof 4.10E-33 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00942 - - cpep:111796026 502.671