Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00946 ATGAGTTGTGGTTCGGATTTCATGTCTGGGAATTCTGAGGCTGATGATCTTAATATTTTAGAGAAGGATCCAACTGGACGATATATACGGTACGATGAGATCTTGGGTAAAGGGGCATTCAAGACAGTATTCAAAGCTTTCGATAAAGCTGGTGGAATTGAAGTTGCTTGGAGCCAAGTGGACATTGAAGATGTTTTGCAGTCACCTGAACAACTTCAAAGATTGTATTCTGAGGTTCATTTGCTGAAGTCACTGAAACATGAGAATATTATCAAGTTCTATAGTTACTGGGTTGATGATAACACTAAGACTATCAACATGATTACAGAATTGTTCACTTCTGGGAGTTTGAGGCAATATCGAAAGAAGCACAGGAAAGTGGACTTGAAGGCTTTCAAGAACTGGGCAAGGAAGATACTGCGGGGTTTAACGTATTTGCACGGTCAGGATCCTCCAATTATTCACAGGGATTTGAAATGTGATAATATATTTGTCAATGGAAATACTGGAGAAGTTAAAATCGGAGATCTCGGATTGGCGATCGTCTTGCAGCAGCCGACTGCCCGAAGTGTAATTGGCACTCCAGAGTTCATGGCTCCAGAGCTCTATGATGAGGACTACAATGAACTTGTTGATATCTATTCTTTTGGCATGTGCATGTTGGAAATTGTTACTTGTGAATACCCATATAATGAGTGCAAAAATTCTGCCCAAATATTCAAGAAGGTTACTTCTGGTGTAATGCCTGCTTCCCTTGAAAAAGTGTTGGATCCTCAAGTTAAACAGTTCATAGAGAAGTGTCTGGTTCCAGCATCCATGAGACTACCTGCAAGTGAACTCTTGAAAGATCCATTCCTTGCAACTGAAAATCGCAAGGATCATAGCTCCGAACCTTCAATGTTATTGAATGCGCAGTTCGAATCAGTAAATCCTCCTCTGCTGGATACTAATCCAATGGACATGGATCACAATTGCAGCAAACTCTCAGGCTCAGTGGCCTCATCTATCGAAAGCAATAATGAAATTTCTCACTTTTCAACTCAGGAACTCAAGACGCTCACTGAGAACAATGAATTGACACTGAAAGGGGACATGACTGATCATAATTCGATTTCGTTCCATTTGCGCATTGCCGAATTATCTGGTCAATCGAAGAACATCCATTTTGCGTTCTTTCTCGATTCCGATACTGCGTTGGCTATTGCTTTGGAGATGGTTGAACAACTTGAACTGTCAAATGAAGATGCTACCATCATAGCACAACTGATAGATGAATTAATTGCCAAGTTTGTTCCCAGTTGGCAACAATGTACAAATTGTTGTGACGGACTAATTACTGAACATAGTTCTTCTGAAACTGAAGAGGATAAGGCCTTCAGTCCTCCTCTCTTCTCTGAGATGGTACTGTCTTCTCCCTTGGTGGGCGCCGGTAGGAAAACTCTGACAGAATTAGCGGAGGTGGAACATCAAGAAAACCAGCAGACAATCATCTCATGTGCATCTCTGGACTACAACCACTCAACCATCTCAGATTACAGCCTGGGAAAAGGAGGATCAGAGTGTGGTGACTTCAGCCACCCGGAATGCGACAAAGCTTTTATCAGCAGCGGCAGCGGAACCAGCGATTTAGATGCTGTTGGATCTGTTTCGACTATGTTCGATTTTGCCAAACCGTCCCTGATCTCCTCCTGCTCAGGAATGTCGAAAGAATTGAGCTTGTCTAACTTCTCCAATTTTTCTGTGGAAGAAAGAGACCAGCATGATGAACTGAAGATGGAGATTGATGCTATTGACATGCAGTACCACCAGTGCCTTTGTGAACTGTCGAGAATGAGAGAGGAAGCTATTGAAAGTGCCAAGAAGAGGTGGATGTCAAAGAAGAAAGTTCCCAGCAGGAGCCATGAACAAGCTTCTTCTTCATCCACATCTCCGCCGCCGGAAGAAAACTCGCCGATTCCTCAGGTGGCTCTCACGGTTCCGACCACCGACGACCCTTCTCTACCGGTTCTCACCTTCCGAATGTGGTTCCTCGGAACTCTCTCCTGCGTTCTTCTCTCTTTTCTCAACCAGTTCTTCTGGTACCGCAAAGAGCCTCTCTCCATCACTGCCATTTCCGCGCAGATCGCCGTCGTTCCTCTCGGCCGTCTTATGGCTTCCACACTCACAGATCGGATCTTCTTCAAAGGAAGTCGCTGGGAGTTTTCGCTTAACCCTGGCCCTTTTAATGTCAAGGAGCACGTTCTCATCACGATCTTCGCCAACTCCGGCGCCGGCTCCGTGTACGCGATTCACGTCGTCACGGTGGTCAAAACCTTCTACAGGCAACATATGAGCTTCCTCGTTTCTCTCATTGTCGTCGTTACGACTCAGGTGTTGGGATTTGGATGGGCGGGGATATTCAGGAAGTATCTGGTGGAGCCAGCGGCGATGTGGTGGCCGGCGAATTTGGTTCAGGTTTCTCTGTTCAGGGCTCTGCACGAGAAAGAAGAACGAACCAAGGGAGGCTTAACCCGAACCCAATTCTTTGTGGTTGCTTTCATTTGCAGCTTCGCCTATTACGTCTTCCCAGGCTACCTCTTCCAAATGCTCACCTCTCTCTCATGGGTCTGCTGGGTATTCCCCACTTCCATTCTGGCCCAACAGATTGGTTCGGGCCTATATGGGCTGGGCCTCGGCTCCATTGGACTCGACTGGTCCACCATCTCCTCCTACTTGGGCAGCCCACTTGCCAGCCCATGGTTTGCCACTGCCAATGTTGCAGTTGGCTTTGTGTTCATCATGTACATCTTGACCCCAATCTGCTACTGGTTCAACCTTTACAAGGCCACCACATTTCCCATTTTTTCTGATGGATTGTTTACTGGGAAAGGCCAGAAGTATGACATTTCCGCCATTGTTGACTCCAATTTTCACCTTGATCCTGCTGCTTATACCAGACAAGGGGAGCTTTATATTAGTACTTTCTTTGCTCTAACTTATGGTGTTGGCTTTGCTGCTCTTTCTGCTACCATTGTTCATGTTGCTCTCTTCCATGGAAGGGAAATATGGCAGCAAAGCAAGTCGAGCTTTCAAGAGAAGACGATGGACATACATACAAAGATGATGAGCAAGTACAAACAAGTTCCTGAATGGTGGTTCGTGTTAATTCTTGTGGCGAATATCGCACTCACCATTTTCGCATGCGAATACTACAACGACCAACTTCAGTTGCCGTGGTGGGGAGTTCTACTTGCCTGTGGCATTGCCATTTTCTTCACTCTCCCTATAGGAATCATCACTGCCATCACCAACCAAACTCCGGGCTTGAACATAATCACCGAGTACATTATCGGATATATCTACCCGGGATATCCCGTCGCTAACATGTGCTTCAAAGTGTATGGATACATTAGCATGACTCAAGCCATTACCTTTTTACAAGATTTCAAGCTTGGCCATTACATGAAGATCCCACCAAGAACCATGTTCATGACTCAGGTTGTTGGAACATTAGTTGCTAGCGTTGTGTACTTGGGCACTGCCTGGTGGCTCTTGGAAACCATCCCTGAAATTTGTAGCTCATCTCAATCCTTCTGGACTTGCCCGTCGGACAGGGTGTTCTACGATGCCTCGGTGATATGGGGGTTGATCGGTCCTCGTCGAATTTTCGGGGACCTTGGACATTACTCATCAGTAAATTGGTTCTTTCTTGTGGGTGCAATTGCTCCTGTTTTTGTATGGTTGGCTGTCAAGGCATTTCCACAGCATGAGTGGATCAAACTTGTCAATATGCCTGTGCTGATTGGGGCCACTGCCTATATGCCTCCAGCCACCGCTGTAAACTACATCACTTGGATCATTATGGGGTTTCTTTCTGGATTTGTTGCGTACAGATATAAGCCAGAATGGTGGCGAAGGCATAACTACATTCTCTCAGGGGCTTTGGATGCTGGTCTTGCTTTCATGGGGGTGCTGTTGTATTTCTCATTAGGGCAGCATGAGATCAGCCTCGACTGGTGGGGGAATGACCTCGATGGTTGTCCGCTCGCGCAGTGCCCGACTGCCCCCGGAGTTACTGTGGAAGGATGCCCACTCTTTACCTGA 4083 46.24 MSCGSDFMSGNSEADDLNILEKDPTGRYIRYDEILGKGAFKTVFKAFDKAGGIEVAWSQVDIEDVLQSPEQLQRLYSEVHLLKSLKHENIIKFYSYWVDDNTKTINMITELFTSGSLRQYRKKHRKVDLKAFKNWARKILRGLTYLHGQDPPIIHRDLKCDNIFVNGNTGEVKIGDLGLAIVLQQPTARSVIGTPEFMAPELYDEDYNELVDIYSFGMCMLEIVTCEYPYNECKNSAQIFKKVTSGVMPASLEKVLDPQVKQFIEKCLVPASMRLPASELLKDPFLATENRKDHSSEPSMLLNAQFESVNPPLLDTNPMDMDHNCSKLSGSVASSIESNNEISHFSTQELKTLTENNELTLKGDMTDHNSISFHLRIAELSGQSKNIHFAFFLDSDTALAIALEMVEQLELSNEDATIIAQLIDELIAKFVPSWQQCTNCCDGLITEHSSSETEEDKAFSPPLFSEMVLSSPLVGAGRKTLTELAEVEHQENQQTIISCASLDYNHSTISDYSLGKGGSECGDFSHPECDKAFISSGSGTSDLDAVGSVSTMFDFAKPSLISSCSGMSKELSLSNFSNFSVEERDQHDELKMEIDAIDMQYHQCLCELSRMREEAIESAKKRWMSKKKVPSRSHEQASSSSTSPPPEENSPIPQVALTVPTTDDPSLPVLTFRMWFLGTLSCVLLSFLNQFFWYRKEPLSITAISAQIAVVPLGRLMASTLTDRIFFKGSRWEFSLNPGPFNVKEHVLITIFANSGAGSVYAIHVVTVVKTFYRQHMSFLVSLIVVVTTQVLGFGWAGIFRKYLVEPAAMWWPANLVQVSLFRALHEKEERTKGGLTRTQFFVVAFICSFAYYVFPGYLFQMLTSLSWVCWVFPTSILAQQIGSGLYGLGLGSIGLDWSTISSYLGSPLASPWFATANVAVGFVFIMYILTPICYWFNLYKATTFPIFSDGLFTGKGQKYDISAIVDSNFHLDPAAYTRQGELYISTFFALTYGVGFAALSATIVHVALFHGREIWQQSKSSFQEKTMDIHTKMMSKYKQVPEWWFVLILVANIALTIFACEYYNDQLQLPWWGVLLACGIAIFFTLPIGIITAITNQTPGLNIITEYIIGYIYPGYPVANMCFKVYGYISMTQAITFLQDFKLGHYMKIPPRTMFMTQVVGTLVASVVYLGTAWWLLETIPEICSSSQSFWTCPSDRVFYDASVIWGLIGPRRIFGDLGHYSSVNWFFLVGAIAPVFVWLAVKAFPQHEWIKLVNMPVLIGATAYMPPATAVNYITWIIMGFLSGFVAYRYKPEWWRRHNYILSGALDAGLAFMGVLLYFSLGQHEISLDWWGNDLDGCPLAQCPTAPGVTVEGCPLFT 1360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5781968 5790763 + CmoCh02G009460.1 Cmo02g00946 376543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00946 1360 Pfam OPT oligopeptide transporter protein 670 1322 IPR004813 GO:0035673
Cmo02g00946 1360 Gene3D Transferase(Phosphotransferase) domain 1 112 293 - -
Cmo02g00946 1360 SUPERFAMILY Protein kinase-like (PK-like) 30 287 IPR011009 -
Cmo02g00946 1360 ProSiteProfiles Protein kinase domain profile. 29 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00946 1360 TIGRFAM ISP4_OPT: small oligopeptide transporter, OPT family 647 1326 IPR004648 GO:0055085
Cmo02g00946 1360 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 373 428 IPR024678 GO:0004674|GO:0005524
Cmo02g00946 1360 Gene3D - 369 460 - -
Cmo02g00946 1360 SMART serkin_6 29 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00946 1360 PANTHER ISP4 LIKE PROTEIN 626 1359 IPR004648 GO:0055085
Cmo02g00946 1360 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 655 1323 IPR004813 GO:0035673
Cmo02g00946 1360 Pfam Protein kinase domain 32 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00946 1360 MobiDBLite consensus disorder prediction 622 659 - -
Cmo02g00946 1360 CDD STKc_WNK 27 286 - -
Cmo02g00946 1360 Gene3D Phosphorylase Kinase; domain 1 13 110 - -
Cmo02g00946 1360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Cmo02g00946 1360 PANTHER OLIGOPEPTIDE TRANSPORTER 7-LIKE 626 1359 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00946 Cmo15g01376 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01517 Cmo-Chr1:11712931 Cmo02g00946 Cmo-Chr2:5781968 0 dispersed
Cmo02g00946 Cmo-Chr2:5781968 Cmo16g00302 Cmo-Chr16:1387655 0 dispersed
Cmo14g02185 Cmo-Chr14:15627030 Cmo02g00946 Cmo-Chr2:5781968 0 dispersed
Cmo03g00704 Cmo-Chr3:6112323 Cmo02g00946 Cmo-Chr2:5781968 0 transposed
Cmo09g01024 Cmo-Chr9:5472652 Cmo02g00946 Cmo-Chr2:5781968 0 transposed
Cmo16g00992 Cmo-Chr16:6844868 Cmo02g00946 Cmo-Chr2:5781968 0 transposed
Cmo18g01347 Cmo-Chr18:12742452 Cmo02g00946 Cmo-Chr2:5781968 0 transposed
Cmo15g01376 Cmo-Chr15:9374276 Cmo02g00946 Cmo-Chr2:5781968 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74120 PF03169 OPT 6.90E-175 No_clan Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00946 - - csv:101207506 1363.59