Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00955 ATGACCGTCCCTGCTTCCGGTTTTATCATGGAAAGCGACGGATCAAACTGCCTGCCACTCCCCCCAGATGTGGAGAATCGGATCGTCTCCGACCTTCTGAAGGAATCCGAGTCTAATTTGAAAGAAGGCAATCTCCACTATGTTGTTTCTAATCGGTGGTTTAGAAGATGGCAATTATATGTCGGACAGCCTACTGAAGAATTTTTTAGCAAAGATCAGTCCTCTGATTCCCCACACTTGAATGTGTCTCCGTTCAACATTCTAAGACCCGGTCCTATTGATAATTCAGATATAATCATTAACGGAGGAGATTCTGAGAATAACGAGTTGGAGATAGAAAGATTTTTGGTGGAACGACGGGATTATGTTTTGGTGCCCGGTGAAGTTTGGGAGAAACTTTATGATTGGTATAAAGGAGGACCACCGTTACCAAGAAAGTTGATATCCCAAGGTGTCACTCAAAAAAATTTTTATGTGGAGGTTTATCTACTTTGTCTAAAATTGATTGATTCCAGGGATGGAAGTGAATCTACCATACGATTGAGCAAGAAGGCCACCATATCTGATCTTCGTGAGAAGGTGTTTGCACTTAAAGGAGTAGAGCAAAAAGAGGCGTGTATATGGGACTACTTCAACAAATGGAAACAATCAGTATTGGATGGGACGAGCCAAACCCTTGAAGAACTAAACTTGCAGATGGATCAACATATCCTCCTTGAAGTTGATGGAACTACTCTTCAGACCGGGGGTGCAGTGATGTCAAGTGGACATTCATCCAGTTATGGTAATCAGGGAAGTTCTTTCAGCACATCAGTTTCTGACATGGATGATAGAAATGACGTTAGTAGTATTGTAAAGAACAGAGGGAGGGGTGGTTTGATAGGGTTGCAGAATTTAGGAAATACATGTTTCATGAATAGTGCCCTTCAATGCTTAGTTCATACGCCACCCTTTGTAGAATATTTTTTACAAGATTATTCTGAAGAGATCAACTCCGACAATCCTTTGGGAATGCACGGAGTGTTTGCCCTTGCTTTTGGTGAATTGTTGAGGAAATTATGGTTGCCAGGACAAAGCTCAATTGCACCACGTGCATTTAAGGGAAACTTAGCTCGTTTTGCTCCCCAGTTCAGTGGTTATAACCAGCACGATTCCCAAGAACTTCTTGCATTCTTACTGGATGGTCTGCATGAAGATTTGAATCGTGTTAAGAGGAAACCTTATTTTGAAACAAAGGCTTCTGATGGTCGTCCAGATGTAGAAGTTGCGGACGAGTGTTGGAGATACCATAAAGCTCGAAATGATTCTATAATTGTGGATGTTTGTCAAGGTCAATATAAGTCAACATTGGTTTGTCCAGTTTGTAGAAAGATTTCCATTACTTTTGATCCATTTATGTATTTGTCATTGCCGCTACCTTCAACTGTCACCCGCAGTGTGACAGTGAGTGTGTTCTATGGTGACGGTAGTGGTCTTCCAATGCCATACACTGTGACAGTACAAAGACATGGTTGCACCAAGGATCTCACCCTTGCATTGGCTACAGCGTGCTGCTTGAAGAGTGATGAAGATCTTCTGCTTGTAGAGGTTTATGATCACAAGATTTACCGATATTTTGATAACCCTCTTGAATTTTTGGCCTCAATTAAAGATGAAGAGTATCTAGTTGCCTTTCGCCTTCCAAAAAGGGAATCTGGAAGACCAAAGCTAGAGATCATTCACAGATCGGTGGAAAAATACTCAACAGACCATTCGAAGGGCTTGGAGAGAAAGCTTTTCGGAACTCCTTTAGTCACATATTTGGGAGAAGAGTTCCATAGTGGAGCTGACATAAATGCAGCTGTGTCTAAGATCCTCTTTCCCTTGAGAAGAACATACTCTTCAACTGTATCTCATAGTAGCAAAGAAAATGACTTTGTTTTTGAAATTAATGATGAACCAGCCAACTGCAGTCCTCGGTCTGGTTCTAGGAGCCAGTCAATGGACAATGAAGTAAAGGAGACATCTGAAAAAGAGTTATTCTTTCAACTTCTTTTAACCGATGCTAGCGGTGTGAGCTGCAAGCCAATTGGTAAGGATTCTGCTATAAAACATGGTCCACTTATAAAGGTTTTCTTGGATTGGACCGACAGAGAACGTAAACTATATGACGTGGGCTACATCGAGGATTTTCCTCCTGTTCACCAGACAAGGTTCATGAAGAAAACACGGCAGGAAGCAACCTCTTTATTTTCATGCTTGGAAGCATTCCTGACTGAAGAACCTTTAGGTCCTGATGATATGTGGTACTGCCCTGTGTGCAAAGAACATGGACAGGCTACAAAGAAGTTAGACTTGTGGAAGTTGCCAGAGATTATTGTGTTTCACTTGAAACGTTTTTCATACCGCAGATACCTTAAAAGAAAACTCGATACCTTTGTTGATTTCCCTATTCACAATCTTGACTTGAGCAAATATGTGAAGAGCAATGATGGAAAATCTTACTTATACAACCTATATGCCATTAGCAACCATAATGGTGGTCTTGGCAGAGGGCACTACACTGCATATTCAAAGTTAATCGATGAGAAGAGGTGGTACCACTTCGATGACAGTCACGTTTCCCCGGTCGATGAAGAAGAGATCAAGACATCGGCTGCTTATTTGCTCTGCGTTCCGGCTGCTACAAGGAAGCTTAACTTTTCATGGTTCAAGCATTAA 2700 41.59 MTVPASGFIMESDGSNCLPLPPDVENRIVSDLLKESESNLKEGNLHYVVSNRWFRRWQLYVGQPTEEFFSKDQSSDSPHLNVSPFNILRPGPIDNSDIIINGGDSENNELEIERFLVERRDYVLVPGEVWEKLYDWYKGGPPLPRKLISQGVTQKNFYVEVYLLCLKLIDSRDGSESTIRLSKKATISDLREKVFALKGVEQKEACIWDYFNKWKQSVLDGTSQTLEELNLQMDQHILLEVDGTTLQTGGAVMSSGHSSSYGNQGSSFSTSVSDMDDRNDVSSIVKNRGRGGLIGLQNLGNTCFMNSALQCLVHTPPFVEYFLQDYSEEINSDNPLGMHGVFALAFGELLRKLWLPGQSSIAPRAFKGNLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKRKPYFETKASDGRPDVEVADECWRYHKARNDSIIVDVCQGQYKSTLVCPVCRKISITFDPFMYLSLPLPSTVTRSVTVSVFYGDGSGLPMPYTVTVQRHGCTKDLTLALATACCLKSDEDLLLVEVYDHKIYRYFDNPLEFLASIKDEEYLVAFRLPKRESGRPKLEIIHRSVEKYSTDHSKGLERKLFGTPLVTYLGEEFHSGADINAAVSKILFPLRRTYSSTVSHSSKENDFVFEINDEPANCSPRSGSRSQSMDNEVKETSEKELFFQLLLTDASGVSCKPIGKDSAIKHGPLIKVFLDWTDRERKLYDVGYIEDFPPVHQTRFMKKTRQEATSLFSCLEAFLTEEPLGPDDMWYCPVCKEHGQATKKLDLWKLPEIIVFHLKRFSYRRYLKRKLDTFVDFPIHNLDLSKYVKSNDGKSYLYNLYAISNHNGGLGRGHYTAYSKLIDEKRWYHFDDSHVSPVDEEEIKTSAAYLLCVPAATRKLNFSWFKH 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5847075 5858904 + CmoCh02G009550.1 Cmo02g00955 376552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00955 899 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 248 884 - -
Cmo02g00955 899 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 244 - -
Cmo02g00955 899 Gene3D Cysteine proteinases 278 487 - -
Cmo02g00955 899 SMART dusp 39 151 IPR006615 GO:0004843
Cmo02g00955 899 Gene3D Cysteine proteinases 616 885 - -
Cmo02g00955 899 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 248 884 - -
Cmo02g00955 899 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 17 244 - -
Cmo02g00955 899 ProSiteProfiles DUSP domain profile. 20 148 IPR006615 GO:0004843
Cmo02g00955 899 SUPERFAMILY DUSP-like 18 148 IPR035927 -
Cmo02g00955 899 SUPERFAMILY Cysteine proteinases 292 883 IPR038765 -
Cmo02g00955 899 Gene3D - 162 246 - -
Cmo02g00955 899 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 830 847 IPR018200 GO:0004843|GO:0006511
Cmo02g00955 899 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 295 310 IPR018200 GO:0004843|GO:0006511
Cmo02g00955 899 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 294 888 IPR028889 -
Cmo02g00955 899 Pfam DUSP domain 45 148 IPR006615 GO:0004843
Cmo02g00955 899 Pfam Ubiquitin carboxyl-terminal hydrolase 294 883 IPR001394 GO:0004843|GO:0016579
Cmo02g00955 899 CDD Peptidase_C19R 733 883 - -
Cmo02g00955 899 Gene3D - 10 161 IPR035927 -
Cmo02g00955 899 MobiDBLite consensus disorder prediction 255 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00955 - - - mcha:111023427 1461.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00955 Cmo06g00541 CCT
Cmo02g00955 Cmo15g01386 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00955 Cmo-Chr2:5847075 Cmo20g00156 Cmo-Chr20:772379 0 dispersed
Cmo01g00563 Cmo-Chr1:2811124 Cmo02g00955 Cmo-Chr2:5847075 0 transposed
Cmo15g01386 Cmo-Chr15:9435007 Cmo02g00955 Cmo-Chr2:5847075 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00955 Cmo_Chr02 FPKM 2.089163 0.0 1.630886 1.714358 7.455225 5.373589 6.410652 2.504652 2.416064 2.087874