Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00960 ATGGAAGTGCAAAATCCTGATCATGGTCACATGATTGAAGTATGTGGAGATGTGCAAGCAGTAGGGCCTAGCATTGTGGGAAGTAAAATTTGTGGGGAGGCACCTTCCTGTGGATTTAAAGATGCAAAAAACAGTTCGATTGATATGAGGGAGCGAAATGCATCCATGCGGAAGCTTTTCATAGCAGCTGTTTGCTGCATCGTTTTTATGAGTATAGAAGTAGTGGGAGGTATTAAAGCAAACAGTCTTGCAATATTGACTGATGCTGCTCATTTGTTGTCGGATGTTGCTGCTTTTGCCATTTCCTTGTTCTCTCTCTGGGCCTCTGGTTGGGAGGCAACTCCGCGCCAGTCATATGGGTTCTTCCGGATTGAAATACTTGGTGCTCTCGTTTCCATTCAGATGATCTGGCTTCTTGCTGGGATTCTTGTTTATGAAGCCATTGTCCGCCTTATCAATGGTCCGGGAGAAGTCAAGGGGCTGCTCATGTTTGCTGTTTCTGCATTTGGGTTGGTTGTTAACATAGCTATGGCTCTGCTGCTCGGTCACGAACATGGTCATGCTCATTCTCATGGTCACAGTCATGGACATGGTGATCACGACCACGGTCATGGCAGCCACGAACATGGTCATGAAGATCATAGGCATCACCATGGGATTAGTGTTACCGCACACCACCACCACCACCCCCACCATGAAGAAGAGGGAGCAGCCGGCGATGGTGTTAAGCATCATCATCATCATCACGCACATGAGGAATCAGTAACTACACCCTTACTTGAAAGCCATTCACAAAAGGTTACCAACACACAGAAAAGAGAACGAAACATAAACGTCCAGGGGGCTTACCTTCACGTACTCGGAGATTCCATCCAAAGCATCGGAGTGATGATTGGCGGGGCAATCATATGGTATAAACCCGAATACAAGATTCTTGACCTGATATGCACTCTCATTTTCTCTGTAATTGTGCTATACACAACAATTCAAATGCTCCGAAACATCCTCGAGGTTCTAATGGAGAGTACACCGCGAGAGATTGATGCAACGAAGCTCGAGAAGGGTCTATGCGAGATGGAGGAAGTAGTTGCAGTTCATGAACTGCACATCTGGGCGATAACGGTCGGAAAGGTTCTATTGGCATGCCATGTTATAATAAAGCCAGAGGCAAATGCAGATATGGTATTGGACAATGTTATAGAGTATATCAAAAGAGAGTACAACATCAGCCATATCACCATTCAGATAGAGCGCCAGTAG 1260 45.79 MEVQNPDHGHMIEVCGDVQAVGPSIVGSKICGEAPSCGFKDAKNSSIDMRERNASMRKLFIAAVCCIVFMSIEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGLLMFAVSAFGLVVNIAMALLLGHEHGHAHSHGHSHGHGDHDHGHGSHEHGHEDHRHHHGISVTAHHHHHPHHEEEGAAGDGVKHHHHHHAHEESVTTPLLESHSQKVTNTQKRERNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEYKILDLICTLIFSVIVLYTTIQMLRNILEVLMESTPREIDATKLEKGLCEMEEVVAVHELHIWAITVGKVLLACHVIIKPEANADMVLDNVIEYIKREYNISHITIQIERQ 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5891255 5894966 + CmoCh02G009600.1 Cmo02g00960 376557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00960 419 MobiDBLite consensus disorder prediction 186 273 - -
Cmo02g00960 419 MobiDBLite consensus disorder prediction 257 273 - -
Cmo02g00960 419 PANTHER METAL TOLERANCE PROTEIN A1 1 418 - -
Cmo02g00960 419 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 1 418 - -
Cmo02g00960 419 MobiDBLite consensus disorder prediction 227 242 - -
Cmo02g00960 419 TIGRFAM CDF: cation diffusion facilitator family transporter 56 419 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cmo02g00960 419 MobiDBLite consensus disorder prediction 194 219 - -
Cmo02g00960 419 Gene3D Cation efflux protein transmembrane domain 55 339 IPR027469 -
Cmo02g00960 419 SUPERFAMILY Cation efflux protein transmembrane domain-like 53 341 IPR027469 -
Cmo02g00960 419 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 346 417 IPR036837 -
Cmo02g00960 419 Pfam Cation efflux family 59 340 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00960 Cmo-Chr2:5891255 Cmo17g00587 Cmo-Chr17:6223803 0 dispersed
Cmo02g00960 Cmo-Chr2:5891255 Cmo14g00634 Cmo-Chr14:3192929 3.34E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00960 K14689 - csv:101213602 644.81