Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00963 ATGTTGGATTGCCATTTAAATGATTTAAAAGGCAACACCAGCGCCGATAAGAACAATGGAGCGGACCTTGAGAAGCAGAGGGTTGAGCTGCCGTCAGCAGCAGATCCCTCTACCAGTGATGTCGATGATCATACACCATTGACAATTGTTGTGTCTAATGGGGAACTTAAATCAATCTCTGAGGTTCCTCGAGAGGAATTATTGCCTTGTGCAGTTTCCCCCATGAAGGAACTCTTGTCTACAACTTCTAGCTCTGATGAGCAGTGCAGAATTTGTCAGCAAGAAAAGGAAGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGTGGTCTTGCAAAAGCTCATCGGACTTGCATAGATACTTGGTTTCGTAGTAAAGGATCAAACCGATGTGAGATTTGCCAGGTTGTAGCAGCGAATGTATCGCCTCCACAATCACATCATGCTACCAACTACTGGATTTGGAGGATTGATCCAACCTACAGAACCCAAGAACCTGAAAGGAGCTACTTCAGTCCAATTTGGCTAGCTTTTGCCATCCTCATCGGAGGTCTGCTACTGGACATTCTTGTATCCATCACCCTCGGCATTTCGGCGTTACCTGTAAATCTCATCATCGGAGTTATTGTAGTGCTTGGACTTGGAACTGTTTTAAGACTTGCCCTGGAGTTCTTTCATGAGTGGAATTCAACGAGAGGATCGCAAAGGGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAG 750 44.67 MLDCHLNDLKGNTSADKNNGADLEKQRVELPSAADPSTSDVDDHTPLTIVVSNGELKSISEVPREELLPCAVSPMKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRTCIDTWFRSKGSNRCEICQVVAANVSPPQSHHATNYWIWRIDPTYRTQEPERSYFSPIWLAFAILIGGLLLDILVSITLGISALPVNLIIGVIVVLGLGTVLRLALEFFHEWNSTRGSQRVESNVTIGYFPAI 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5907809 5910513 + CmoCh02G009630.1 Cmo02g00963 376560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00963 249 SUPERFAMILY RING/U-box 84 137 - -
Cmo02g00963 249 Pfam RING-variant domain 89 134 IPR011016 GO:0008270
Cmo02g00963 249 ProSiteProfiles Zinc finger RING-CH-type profile. 81 141 IPR011016 GO:0008270
Cmo02g00963 249 PANTHER ZINC FINGER, RING-CH-TYPE 66 248 - -
Cmo02g00963 249 CDD RING_CH-C4HC3_MARCH 89 135 - -
Cmo02g00963 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH11 ISOFORM X1 66 248 - -
Cmo02g00963 249 MobiDBLite consensus disorder prediction 1 22 - -
Cmo02g00963 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 143 IPR013083 -
Cmo02g00963 249 SMART ringv_2 88 135 IPR011016 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00963 - - - csv:101210694 365.925
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00963 Cmo-Chr2:5907809 Cmo04g02202 Cmo-Chr4:16391261 1.16E-11 dispersed
Cmo02g00963 Cmo-Chr2:5907809 Cmo15g01397 Cmo-Chr15:9508894 3.42E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g282 . . . Bda08g00749 . . . . . . Cma02g00955 . Car02g00704 Car15g01201 . . . . . . . . . . . . . . . . . . . . . . . Chy09g01350 . . . . . . . . . . Cmo02g00963 . . . . . . . Bhi12g00062 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004760 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 4 8 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00963 Cmo_Chr02 FPKM 17.511509 14.678682 19.402658 15.181295 28.409641 30.253176 32.122894 26.457951 27.614487 26.191116