Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00966 | ATGGATTTTGGGTTCAATTCACTTCAAAATCACCATCTTCGCTCGAGAAATGGCCTGAATTTGGAGCCGGCGGAGGAAGCTAGTTCCGCCGCCGTGGATTTCGACGGTGGTGGTGGTGGTGGAGGTGGTGGAGGAGAGGTTGAGAGGGAACATATGTTTGACAAAGTGGTGACGCCGAGTGATGTTGGGAAATTGAATCGGTTAGTGATTCCAAAGCAACATGCTGAGAGGTTTTTCCCATTAGATTCATCAACAAATGAAAAGGGTTTGCTTTTAAATTTCGAAGATCGTCACGGGAAATCGTGGCGGTTTCGTTACTCTTACTGGAATAGTAGCCAGAGTTATGTTATGACTAAAGGTTGGAGTCGATTCGTTAAAGAGAAGCGTCTTGACGCCGGTGATGTCGTCTCGTTTCAACGTGGAGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGGCGTCGTCGCCCGGAGCTTCCAATTGACCACCACCACCACCATCACCACCACCCCATCGGCATCCGACCAAGCATCGTCATGCCCACCACCGCTTGGGGGTCATTAGTATGGCAACCACTCGGCGTAACAGCAACTAGATATCATCATCCAGCTACCGTAGCACCGCAGGACCACACACACATGTCGCGAATAAACAACAACAACAGCAGCAACGTTAACAGTATGTATGATAGGAATAGAGGGTATTGTCCTTACGGATATGGGAGTGTCGAATCATCATCGTCATCAGAAATGGTGTTTTTTGGGAGAGCCTCAAGATTAGGGGATGGTTTGGAGGGGAAGAACGAGATGCAGCCGGAGTATATGAGTAGTGGCGGTGGCGGTGGTGGTGGTGGTTCGATGGCGGTCCAAGAGAGTTACAGCGAAGAAGATACGCCGGTGAAGAGATCAAGGCTGAGGCTTTTTGGTGTAAATATGGAGATGGAGTGCCCAATAATGTCATCTTCTTCAGATGAATGTGACTTATTACTGTCTTCTTCTTCTAATTCAAACCCCAAAACCACCGCTCCTTCCAATTGA | 1041 | 48.03 | MDFGFNSLQNHHLRSRNGLNLEPAEEASSAAVDFDGGGGGGGGGGEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNEKGLLLNFEDRHGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDVVSFQRGVGEIGRDRLYIDWRRRPELPIDHHHHHHHHPIGIRPSIVMPTTAWGSLVWQPLGVTATRYHHPATVAPQDHTHMSRINNNNSSNVNSMYDRNRGYCPYGYGSVESSSSSEMVFFGRASRLGDGLEGKNEMQPEYMSSGGGGGGGGSMAVQESYSEEDTPVKRSRLRLFGVNMEMECPIMSSSSDECDLLLSSSSNSNPKTTAPSN | 346 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5922021 | 5923061 | - | CmoCh02G009660.1 | Cmo02g00966 | 376563 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00966 | 346 | MobiDBLite | consensus disorder prediction | 326 | 346 | - | - | |
Cmo02g00966 | 346 | CDD | B3_DNA | 51 | 140 | IPR003340 | GO:0003677 | |
Cmo02g00966 | 346 | SMART | B3_2 | 53 | 158 | IPR003340 | GO:0003677 | |
Cmo02g00966 | 346 | SUPERFAMILY | DNA-binding pseudobarrel domain | 50 | 159 | IPR015300 | - | |
Cmo02g00966 | 346 | Pfam | B3 DNA binding domain | 53 | 157 | IPR003340 | GO:0003677 | |
Cmo02g00966 | 346 | MobiDBLite | consensus disorder prediction | 276 | 299 | - | - | |
Cmo02g00966 | 346 | ProSiteProfiles | B3 DNA-binding domain profile. | 53 | 158 | IPR003340 | GO:0003677 | |
Cmo02g00966 | 346 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 27 | 333 | IPR044800 | GO:0003700 | |
Cmo02g00966 | 346 | MobiDBLite | consensus disorder prediction | 24 | 48 | - | - | |
Cmo02g00966 | 346 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 | 27 | 333 | - | - | |
Cmo02g00966 | 346 | Gene3D | - | 47 | 171 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00966 | Cmo-Chr2:5922021 | Cmo17g00535 | Cmo-Chr17:5282653 | 3.60E-72 | dispersed | |
Cmo15g01401 | Cmo-Chr15:9532332 | Cmo02g00966 | Cmo-Chr2:5922021 | 1.33E-97 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9268 | PF02362 | B3 | 1.40E-29 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00966 | - | - | cpep:111796005 | 587.03 |