Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00966 ATGGATTTTGGGTTCAATTCACTTCAAAATCACCATCTTCGCTCGAGAAATGGCCTGAATTTGGAGCCGGCGGAGGAAGCTAGTTCCGCCGCCGTGGATTTCGACGGTGGTGGTGGTGGTGGAGGTGGTGGAGGAGAGGTTGAGAGGGAACATATGTTTGACAAAGTGGTGACGCCGAGTGATGTTGGGAAATTGAATCGGTTAGTGATTCCAAAGCAACATGCTGAGAGGTTTTTCCCATTAGATTCATCAACAAATGAAAAGGGTTTGCTTTTAAATTTCGAAGATCGTCACGGGAAATCGTGGCGGTTTCGTTACTCTTACTGGAATAGTAGCCAGAGTTATGTTATGACTAAAGGTTGGAGTCGATTCGTTAAAGAGAAGCGTCTTGACGCCGGTGATGTCGTCTCGTTTCAACGTGGAGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGGCGTCGTCGCCCGGAGCTTCCAATTGACCACCACCACCACCATCACCACCACCCCATCGGCATCCGACCAAGCATCGTCATGCCCACCACCGCTTGGGGGTCATTAGTATGGCAACCACTCGGCGTAACAGCAACTAGATATCATCATCCAGCTACCGTAGCACCGCAGGACCACACACACATGTCGCGAATAAACAACAACAACAGCAGCAACGTTAACAGTATGTATGATAGGAATAGAGGGTATTGTCCTTACGGATATGGGAGTGTCGAATCATCATCGTCATCAGAAATGGTGTTTTTTGGGAGAGCCTCAAGATTAGGGGATGGTTTGGAGGGGAAGAACGAGATGCAGCCGGAGTATATGAGTAGTGGCGGTGGCGGTGGTGGTGGTGGTTCGATGGCGGTCCAAGAGAGTTACAGCGAAGAAGATACGCCGGTGAAGAGATCAAGGCTGAGGCTTTTTGGTGTAAATATGGAGATGGAGTGCCCAATAATGTCATCTTCTTCAGATGAATGTGACTTATTACTGTCTTCTTCTTCTAATTCAAACCCCAAAACCACCGCTCCTTCCAATTGA 1041 48.03 MDFGFNSLQNHHLRSRNGLNLEPAEEASSAAVDFDGGGGGGGGGGEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNEKGLLLNFEDRHGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDVVSFQRGVGEIGRDRLYIDWRRRPELPIDHHHHHHHHPIGIRPSIVMPTTAWGSLVWQPLGVTATRYHHPATVAPQDHTHMSRINNNNSSNVNSMYDRNRGYCPYGYGSVESSSSSEMVFFGRASRLGDGLEGKNEMQPEYMSSGGGGGGGGSMAVQESYSEEDTPVKRSRLRLFGVNMEMECPIMSSSSDECDLLLSSSSNSNPKTTAPSN 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5922021 5923061 - CmoCh02G009660.1 Cmo02g00966 376563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00966 346 MobiDBLite consensus disorder prediction 326 346 - -
Cmo02g00966 346 CDD B3_DNA 51 140 IPR003340 GO:0003677
Cmo02g00966 346 SMART B3_2 53 158 IPR003340 GO:0003677
Cmo02g00966 346 SUPERFAMILY DNA-binding pseudobarrel domain 50 159 IPR015300 -
Cmo02g00966 346 Pfam B3 DNA binding domain 53 157 IPR003340 GO:0003677
Cmo02g00966 346 MobiDBLite consensus disorder prediction 276 299 - -
Cmo02g00966 346 ProSiteProfiles B3 DNA-binding domain profile. 53 158 IPR003340 GO:0003677
Cmo02g00966 346 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 27 333 IPR044800 GO:0003700
Cmo02g00966 346 MobiDBLite consensus disorder prediction 24 48 - -
Cmo02g00966 346 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 27 333 - -
Cmo02g00966 346 Gene3D - 47 171 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00966 Cmo-Chr2:5922021 Cmo17g00535 Cmo-Chr17:5282653 3.60E-72 dispersed
Cmo15g01401 Cmo-Chr15:9532332 Cmo02g00966 Cmo-Chr2:5922021 1.33E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9268 PF02362 B3 1.40E-29 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00966 - - cpep:111796005 587.03