Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g00975 | ATGGAACCCGCTGCAGAACCTGGATCCGGATCCGGATCCGGATTGGAATTACCTCCATCTCAATCTCAATTTACTGTTTCGCCGCCGGATATCACCACTCCGTCCTTGACTGTAGACGCCACAACCGATTCTCAACATGTCGAAGTTGCTTCGCCGATTAGTAGTCGTCCTCCTGCATCGTCTTCCTTGAATTATGAGGAAATCTTTCGTCTCTCCACTACTGTCCAGATGCCGGTCGTCGGCGATGATGAAGGACTTGCCGGAGATGATGCCGACCGAACAACCGGTAGTAGCGGCGCTGGTAATCGATGGCCTCGTCAGGAAACTCTAGCGCTGCTTAGAATTAGGTCAGATATGGATTCCGCTTTCCGTGATGCGACACTCAAAGGTCCTCTCTGGGATGAAGTTTCCAGGAAGCTAACGGAATTGGGTTACAACAGAAGCGCCAAAAAATGCAAAGAGAAATTCGAGAACGTTCAGAAATATTACAAGCGCACTAAAGAAGGCCGTGGTGGCCGTCAAGATGGCAAAACCTACAAATTCTTCACACAACTTGAGGCACTTCACAACGCCTCCGCCTCCGCCTCCGCCTCCGCCGCGGCATCTACTCCCAACGTGGCGGTTTCTTGTTTCTCAGCGCCGCCCATTGGTTTTGGAATTAGTAACCCAACTCCAATCTCATCTGTCAAAATCTCTTCTACTGTTATTTCCTCACAGACCCCAATGGGAATCTATTCACCTGCTGACCATTTCACCGTCAGGCCACCGCCTGTGACCGCTCCTATGGGTGTCAGCTTTTCGTCGAACACCTCGTCTGCATCCACGGAGGAGGATGATGACGATGAAGAAGAGATGGGGTTTGATGTTGACCTTGAAGGGGAGCCGTCGAGTGTCGCCGGAACCAGTCGGAAGCGGCGGAGGGGGGTGGTTAAGGGAAGTGGGTCGAAAACCCATAAGATGATGATGGAGTTTTTTGAGGGTTTGATGAAGGAAGTGATGCATAAACAGGAGGTTATGCAGCAGAAGTTTCTTGAAGCGATGGGGAAGAGAGAGCAGGATAGAATGATTAGAGAAGAGACGTGGAAAAGGCAAGAAATGGCTAGATTGAGCCGAGAGCAAGAGAGAATGGCACAAGAACGGACAATTTCTGCTTCTAGGGATGCCGCTATCATTGCTTTTCTTCAGAAATTTACTGGCCAAACCATTCAATTACCTGTGGTGAATATCCCTTCTTCTGTAGCCCCACACCACCAACATCAACAACATGATGTGCCTGTGCCTATGCCTGTGCCTGTCCCAGTGTCAGTGCCCGTGCCATTATCTCCTGTCCCCCCTCCGCCATTGCAACCACAAACAGCTCTGTCACTGCAGCAAAATAAAAAAACCGCCCAGGATCAGAATCCGCCGCCTTCAAATACACTGTCGCCATTGGATCAGCCAATGCCATATCAGGAAATCAGCCAAGGGGGAGATGGGAGTGCCGAACCCTTCTCTTCAAGATGGCCAAAACAAGAAGTTCTAGCTCTGATTAAGCTGAGAGGTGGGCTTGAAACGAGGTATCAAGAGACAGGTCCAAAGGGTCTTCTCTGGGAAGAAATATCAGCTGGAATGCAACGGATGGGTTACAAGAGAAGCGCCAAAAGATGCAAGGAGAAATGGGAAAACATCAATAAGTACTTCAAGAAGGTTAAAGAAAGCAACAAAAAACGCCGCGAGGATTCTAAAACCTGCCCCTATTTCAACGAACTCGACGCCCTTTACCGCAAAAAGATCCTCGGCAGCAGCAGCGGCGGCGGTGGTTCTGATGGCGGTGGTAGTGGCAGTAGAAGCTCGTTCAGCGACACGAGCAAAACCGAACAAGACCCCATTAAGAATATGGACACGAAAATGGCCCTATCAACAGCTACAGAAACTTCTCAAACCATACTCACTGAAGGCCTATCCGCAAGCCTCTTCGGTGAAGGAACTGAAGAACAACCAGCAACATCCACGAAGCCAGAAGACATTGTGAATGAGCTGATGGAGCTGCATGAGCTCTACCGACCTGATAGCAACAATGAAGAAGAGTATTGCAGCGAAGATGAGGATGATACACCAGACAACGACGACAAGGACAAGAACAAGAACACGAAGAACACGAAGAACATGGATTACAAAATAGAGTTTGAGAGAAGAAATGCAGGGAGCTCCAATGGCGTGGGGAATGAGTTTCAGTCAATGGCGGTGGTTCAATAG | 2235 | 49.35 | MEPAAEPGSGSGSGLELPPSQSQFTVSPPDITTPSLTVDATTDSQHVEVASPISSRPPASSSLNYEEIFRLSTTVQMPVVGDDEGLAGDDADRTTGSSGAGNRWPRQETLALLRIRSDMDSAFRDATLKGPLWDEVSRKLTELGYNRSAKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFTQLEALHNASASASASAAASTPNVAVSCFSAPPIGFGISNPTPISSVKISSTVISSQTPMGIYSPADHFTVRPPPVTAPMGVSFSSNTSSASTEEDDDDEEEMGFDVDLEGEPSSVAGTSRKRRRGVVKGSGSKTHKMMMEFFEGLMKEVMHKQEVMQQKFLEAMGKREQDRMIREETWKRQEMARLSREQERMAQERTISASRDAAIIAFLQKFTGQTIQLPVVNIPSSVAPHHQHQQHDVPVPMPVPVPVSVPVPLSPVPPPPLQPQTALSLQQNKKTAQDQNPPPSNTLSPLDQPMPYQEISQGGDGSAEPFSSRWPKQEVLALIKLRGGLETRYQETGPKGLLWEEISAGMQRMGYKRSAKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFNELDALYRKKILGSSSGGGGSDGGGSGSRSSFSDTSKTEQDPIKNMDTKMALSTATETSQTILTEGLSASLFGEGTEEQPATSTKPEDIVNELMELHELYRPDSNNEEEYCSEDEDDTPDNDDKDKNKNTKNTKNMDYKIEFERRNAGSSNGVGNEFQSMAVVQ | 744 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6010106 | 6013631 | - | CmoCh02G009750.1 | Cmo02g00975 | 376572 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g00975 | 744 | SMART | sant | 497 | 559 | IPR001005 | - | |
Cmo02g00975 | 744 | SMART | sant | 100 | 162 | IPR001005 | - | |
Cmo02g00975 | 744 | ProSiteProfiles | Myb-like domain profile. | 102 | 160 | IPR001005 | - | |
Cmo02g00975 | 744 | MobiDBLite | consensus disorder prediction | 14 | 63 | - | - | |
Cmo02g00975 | 744 | MobiDBLite | consensus disorder prediction | 262 | 315 | - | - | |
Cmo02g00975 | 744 | MobiDBLite | consensus disorder prediction | 441 | 499 | - | - | |
Cmo02g00975 | 744 | MobiDBLite | consensus disorder prediction | 670 | 687 | - | - | |
Cmo02g00975 | 744 | MobiDBLite | consensus disorder prediction | 728 | 744 | - | - | |
Cmo02g00975 | 744 | MobiDBLite | consensus disorder prediction | 627 | 647 | - | - | |
Cmo02g00975 | 744 | MobiDBLite | consensus disorder prediction | 599 | 619 | - | - | |
Cmo02g00975 | 744 | MobiDBLite | consensus disorder prediction | 452 | 482 | - | - | |
Cmo02g00975 | 744 | MobiDBLite | consensus disorder prediction | 594 | 744 | - | - | |
Cmo02g00975 | 744 | MobiDBLite | consensus disorder prediction | 274 | 290 | - | - | |
Cmo02g00975 | 744 | CDD | GT1 | 499 | 564 | - | - | |
Cmo02g00975 | 744 | CDD | GT1 | 102 | 167 | - | - | |
Cmo02g00975 | 744 | Gene3D | - | 501 | 562 | - | - | |
Cmo02g00975 | 744 | Gene3D | - | 104 | 165 | - | - | |
Cmo02g00975 | 744 | Pfam | Myb/SANT-like DNA-binding domain | 102 | 188 | IPR044822 | - | |
Cmo02g00975 | 744 | Pfam | Myb/SANT-like DNA-binding domain | 499 | 586 | IPR044822 | - | |
Cmo02g00975 | 744 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Cmo02g00975 | 744 | PANTHER | - | 43 | 599 | - | - | |
Cmo02g00975 | 744 | MobiDBLite | consensus disorder prediction | 80 | 103 | - | - | |
Cmo02g00975 | 744 | ProSiteProfiles | Myb-like domain profile. | 499 | 557 | IPR001005 | - | |
Cmo02g00975 | 744 | MobiDBLite | consensus disorder prediction | 701 | 724 | - | - | |
Cmo02g00975 | 744 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR GT-2 | 43 | 599 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00975 | Cmo15g01408 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00975 | Cmo-Chr2:6010106 | Cmo20g01084 | Cmo-Chr20:10264768 | 2.65E-21 | dispersed | |
Cmo10g00066 | Cmo-Chr10:301666 | Cmo02g00975 | Cmo-Chr2:6010106 | 1.35E-09 | dispersed | |
Cmo10g01061 | Cmo-Chr10:5642059 | Cmo02g00975 | Cmo-Chr2:6010106 | 3.76E-07 | dispersed | |
Cmo11g00043 | Cmo-Chr11:177786 | Cmo02g00975 | Cmo-Chr2:6010106 | 2.88E-10 | dispersed | |
Cmo15g01408 | Cmo-Chr15:9597606 | Cmo02g00975 | Cmo-Chr2:6010106 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9269 | PF13837 | Myb_DNA-bind_4 | 4.00E-22 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g00975 | - | - | cpep:111795959 | 1220.3 |