Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00976 ATGGGTTTGCTTCGATTCTTCAAGAAATCCAAACTTTCTCATAAAAAAACCGTTCTTGACCATGTTTTTTTTGCTGCTGGGAAGTTCCGGTGGACTGAGATCGAGGCTTTTACTAATCATTTCTCCACCGTCGTCGGCTCCGGCGGCTTTAGCAAAGTGTATCTTGCTCGGATGACAGCCGGAACGGCGGCGGTTAAGATTTTGGGAGGTAGTGAGCGGCTCAATCGGATGTTCCGGCAGGAGTTGGACATTCTCCTTCAGCTCCGGCACCGAAATATTGTCGGTTTCATTGGCTATTGCGATGAAGGAGGTGAGAAGCTGAATTTAGGAGCTTTAGTATTCGAATATGTCCCAAATGGGAATTTACAAGAGAAGCTCCACAGCCGACCGGCGGCGGCGGCGGCGGTTCTGCCATGGGAAATCCGGCTGACCATAGCCTTTCAATTAGCCCAAGCAATCGAATATCTCCACGAGAAATGCAGACTCCAAATCGTTCACAGCGATATAAAATCTTCAAACATTTTACTCGACGAACGATTCAATTGCAAATTGTGCGATTTCGGCTCTGCAAAAATGGGATTCTCGTCGGCGGTGGCGAATCAGTCGTCGTCGCCGCCGAGCCCTTTCAGAGCAAAGCAATTGATGATGGGATCCCCTGGTTACACAGATCCCCAATACTTACGAACCGGAATCGCTTCAAAAAAGAACGACATTTACAGTTTCGGCGTCGTTCTTTTAGAGCTAATCACCGGAAAAGAGGCATTCTGTTCGGAAAAGGGTCAGATTTTAACTTCAATTATACCGCCGAAGGTGCGCCACGGTGGAGGAATTACACCGTCGGCAGTGGTGGAGCTAGTGGATCCACGGCTTCGGGGGAATTTCGATGGGGGAGAAGCGGGAGCCTTGCTCTCAATTGCGACGGCCTGCATATCGCAGCCGCCGGCGCCCAGGCCGACGATCGGTGGGGTACTGCAGATGATGAGGGAGCGGATCGGGAAGATGAGCGGAGACACGTGGCAATAA 1023 50.73 MGLLRFFKKSKLSHKKTVLDHVFFAAGKFRWTEIEAFTNHFSTVVGSGGFSKVYLARMTAGTAAVKILGGSERLNRMFRQELDILLQLRHRNIVGFIGYCDEGGEKLNLGALVFEYVPNGNLQEKLHSRPAAAAAVLPWEIRLTIAFQLAQAIEYLHEKCRLQIVHSDIKSSNILLDERFNCKLCDFGSAKMGFSSAVANQSSSPPSPFRAKQLMMGSPGYTDPQYLRTGIASKKNDIYSFGVVLLELITGKEAFCSEKGQILTSIIPPKVRHGGGITPSAVVELVDPRLRGNFDGGEAGALLSIATACISQPPAPRPTIGGVLQMMRERIGKMSGDTWQ 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6020389 6021932 + CmoCh02G009760.1 Cmo02g00976 376573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00976 340 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 25 336 - -
Cmo02g00976 340 ProSiteProfiles Protein kinase domain profile. 39 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00976 340 PANTHER BNAA02G22020D PROTEIN 25 336 - -
Cmo02g00976 340 SMART serkin_6 39 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00976 340 Gene3D Phosphorylase Kinase; domain 1 5 116 - -
Cmo02g00976 340 SUPERFAMILY Protein kinase-like (PK-like) 26 327 IPR011009 -
Cmo02g00976 340 Pfam Protein kinase domain 42 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00976 340 Gene3D Transferase(Phosphotransferase) domain 1 117 336 - -
Cmo02g00976 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Cmo02g00976 340 ProSitePatterns Protein kinases ATP-binding region signature. 45 66 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00976 - - - cmax:111468884 519.235
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00976 Cmo15g01410 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00976 Cmo-Chr2:6020389 Cmo01g00086 Cmo-Chr1:396355 1.52E-55 dispersed
Cmo15g01410 Cmo-Chr15:9612513 Cmo02g00976 Cmo-Chr2:6020389 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g299 . . . . . . . . . . Cma02g00970 Cma15g01347 Car02g00716 Car15g01215 . . Cpe05g00747 . . . . . . . . . . . . . . . . . . . Csa05g00131 Chy09g01363 . . . . . . . . . . Cmo02g00976 Cmo15g01410 . . . . . . Bhi12g00045 . . . . . Lcy12g1449 Cla01g00115 . . . . . . Lsi09g00103 . . Cme09g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011519 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 2 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74121 PF00069 Pkinase 6.60E-39 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g00976 Cmo_Chr02 FPKM 2.116759 2.89101 0.399604 0.382977 1.006919 0.882282 0.890553 0.659369 0.499445 0.879284