Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00977 ATGCCGGAATCGGAAAGTGGAACGCCGGTGCCGTCGGCTCCGGCCACGCCGGGGACGCCGGGAGGGCCGCTGTTTTCTGGCTTGCGGGTGGATTCGTTGTCGTACGATCGGAAGTCAATGCCGCGGTGTAAGTGCTTGCCCGTGAATGCTCCCACGTGGGGCCAGCCTCACACGTGCTTCACTGACTTTCCTGTTCCTGATGTTTCTCTCACCCGCAAGTTGGGAGCAGAATTCGTGGGAACATTCATCCTGATATTTGCGGCGACGGCAGGACCCATTGTGAATCAGAAGTACAACGGCGCCGAGACTCTGATCGGAAACGCTGCGTGTGCCGGGCTGGCCGTAATGATCGTAATTCTGTCGACTGGACACATCTCCGGCGCCCACCTAAACCCATCGCTCACCATTGCCTTCGCCGCTCTCCGCCACTTCCCATGGGTCCAAGTCCCTGCCTACATCGCTGCTCAGGTCTCTGCTTCCATTTGCGCCTCTTTTGCTCTTAAAGGTGTTTTTCACCCTTTCATGTCTGGCGGCGTCACCGTCCCCTCTGTCAGCACCGGCCAAGCCTTCGCTCTTGAATTCTTTATCACTTTCAATCTCTTGTTCGTTGTCACCGCCGTCGCAACCGATACTCGAGCGGTGGGAGAGTTGGCTGGGATTGCAGTTGGAGCTACAGTTATGGTGAACATTCTTGTGGCCGGGCCCTCAAGTGGTGGTTCCATGAACCCTGTTCGAACATTGGGCCCCGCCGTGGCTGCCGGAAATTACAGAGCATTATGGGTGTATCTAGTGGCACCAACGCTGGGAGCCATCGTCGGCGCGGGAACTTACACCGCTGTGAAGCTGCGAGACGACGAAGTGGATGCTCCGTCTCAGGTGAGGAGCTTCCGCCGCTGA 897 57.75 MPESESGTPVPSAPATPGTPGGPLFSGLRVDSLSYDRKSMPRCKCLPVNAPTWGQPHTCFTDFPVPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYNGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWVQVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFFITFNLLFVVTAVATDTRAVGELAGIAVGATVMVNILVAGPSSGGSMNPVRTLGPAVAAGNYRALWVYLVAPTLGAIVGAGTYTAVKLRDDEVDAPSQVRSFRR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6022903 6025992 - CmoCh02G009770.1 Cmo02g00977 376574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00977 298 MobiDBLite consensus disorder prediction 1 24 - -
Cmo02g00977 298 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g00977 298 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g00977 298 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g00977 298 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g00977 298 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g00977 298 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g00977 298 SUPERFAMILY Aquaporin-like 69 286 IPR023271 -
Cmo02g00977 298 Pfam Major intrinsic protein 68 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g00977 298 Gene3D Glycerol uptake facilitator protein. 64 292 IPR023271 -
Cmo02g00977 298 PANTHER AQUAPORIN NIP2-1 11 296 IPR034294 -
Cmo02g00977 298 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Cmo02g00977 298 PANTHER AQUAPORIN NIP5-1 ISOFORM X1-RELATED 11 296 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00977 Cmo15g01411 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00977 Cmo-Chr2:6022903 Cmo03g01346 Cmo-Chr3:9977225 1.85E-71 dispersed
Cmo01g00187 Cmo-Chr1:811419 Cmo02g00977 Cmo-Chr2:6022903 2.50E-126 transposed
Cmo04g00667 Cmo-Chr4:3315281 Cmo02g00977 Cmo-Chr2:6022903 5.16E-107 transposed
Cmo15g01411 Cmo-Chr15:9615452 Cmo02g00977 Cmo-Chr2:6022903 1.19E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00977 K09874 - csv:101212651 566.614