Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00983 ATGGAGCGGGAACAAAGCTGCTCCGCCGCCGTGAAAGATGAATTTCATCCAAATCCACACATCGATGCCCAAACGTTGATTTTGAAATCGATTTTCTTCTTGGATGGCGTCGGCGAGGTCATCGTCACTTGCAATTCAGATGGGTTGTTTTGGGAATTGGTTGACTTCCCAGAATCTGTTGGCTCAGGATGCATGGGCATTAAGCTTGTTCCCGATGTTGCAGCAGAGGTCAAGTTTTCTGATGCTTATGCTGTTGAGTTTGACGACTTTGGAGTGATTCATAAATCAAAACTTGCGGCTGTTGCAAGCTGTATGATATGCAATGAATACGAGAAACAGATGTATAGATTTACAGTGCACAGTTTTCAAAGATCAAAATCTCAGCCTGCTCATTGGGCCCTGACTATGTTTACATTTGGACACGAGGACCAGCAAACATGTCAGATGTGGGTAAATCAGATTAATGCATCTTTGGACCTTGAAGTTGAGAGACCAAAGAATCTTCTTGTTTTTGTTAATCCTAAGAGTGGGAAAGGGATAGGGAGCCGAACGTGGGAAGCAGTAGCTCCTATATTTTTACGTGCTGAAATAAACACGAAGGTGATTGTGACTGAAAGAGCAGGTCATGCATTTGATGTAATGGCATCTATTGCAAACGAGGATCTAAAAATGTATGATGGTATTGTTGCTGTTGGTGGAGATGGTTTCTTCAATGAGATCCTTAATGGGTTTCTTTTGTCGAGGCATTTGGCACATTACCCACCAGCCCCGTCGGATATTGTAGACGTCGTGCAGGCTGAAGGTAACTATTCCAGTGAAGCAATAACCGAAGATGTCGATCGAAGTGAAGATCAGTCGCCACTTCTCTTAAGTGCTAAATATGGTGGATCAGGACTCTCAACTTCTCAGAACTCAACAGTGTATGGTTTTGATTCAGCATTTGATAGATGGTTCAGATTCGGAATCATTCCTGCTGGCTCAACGGACGCTATTGTGATGTGTTCTACTGGATATCGAGATCCTATTACATCAACCCTGCAAATTGTCCTGGGTAAAAGAGTTCACCTTGATATAGCTCAAGTAGTTAGGTGGAAAGAGACTCCGACGTCAAAGTTAGAACCTCTCGTACGCTATGCGGCTTCTTTTGCTGGATATGGGTTTTATGGAGATGTCATTACAGAGAGCGAAAAATTCCGCTGGATGGGGCCTCGACGTTACGATTATGCTGGTACAAGAGTGTTCTTGAGGCACAGTTCATACGAGGCCGAGGTAGCCTACGTAGATATAAAGTCGGAGGATACGAATACAAATGGGAAAAGAGTGCTCTGTTGTCATAACTGCAGTATTTGTAGCACAAAGGTATACTTACAGCATTCTAACACTGGCTCGGATTCGAGTCAGGACGAAACAAGATGGTTGAAATCGAAGGGACGTTTCCTAAGCATTGGCGCTGCGAAGCCACAGAGTAGCATGATTATGGAGGGGATGGAAGAGGAAGCCGATAAAGATCTTATGTTGCTGCCTTCCTCTTCTCCAGCTGTAGCAGTTGCTATCAGTGGGAACAAAAGCAGTAAACATATAATTAGGTGGTCCTTGGAAAATTTTCGACACAAGGGCATCATTAGTTTCAAGTTGATACACATCATCCCAAGGATTACTAGTGTGCCAACTCCAATGGGAAACTCAATTCCAGTTTCACAAGTTCGTGAAGATGTTGCTGCGGCTTATAGGAAAGAAATGGGGTGGCAGACAAGTGAAAAGCTTGTTCCATATAAGAAGATGTTTGCTCAGAGAAAGGTCCAGCCTTACTCTAATTTGAATTATGGGAAACTAAACGGTCTGTCCTCAAGAATATCAGCTCATGCACCTAGATATTGTACGGTCTATGCCATTTCAAAAGGAAAATTAGCCTCAATACGGCCACCTGATATGGAGACAAGCGTGAGCATTAAAGATGATTCGAGTGAAGCAAGTTCTGCACATAGCTACTCAAGCTATTCTTCTAGCTCACTTACAGGTAGCCCCATTGTAGCCAACCATTCTCGGTACCATTCCGTTGATATTGAGGAGCCGGTGGATCGCCTTCGATCCTCTCCCAATGTTTCATATTGTGCACAAACATTGAGTCGAGCCTCTAGTTGTAAAAGCTTGCCAACAGATTACAAGTCATGGGTTCCTGATGAAGCTTCATCATCAGGCACATTCAATGATTATGTTTCATGTGAAAGTCAGGCGGATGTCAACTTTGAGCTTGAAAAGTTGAGAATTGAACTAAAACATGCAAGAGAAATGTACGCAATTGTTCAGCAAGAGACGGCCAATGCCACTTTGAAGGTGAGCCATCTAAATAAACAACGATCGAAAGAAGCTAAGAAGCTTGAGGAGATCAACAATAAAGATGTATCTGGTAAAGAATTTGCAAGGGAAAAGAGAGCAAATGTTGAGGCTTTGAGAAGAGAAGCAAACTTTGTAAGAGAAGGTGCTGAAAGAGAGGGTATCTATAGGAAGGAAGCAGAGACGAAAGCTGTTCAAGATGCCAAAGAGAAGGGAAAGCATGAGAGTGCTCTTCATGGATATCTGCAGCAATACCAACATTTTGAATGGGATGATATTGTATCTGCTGCATCATCTTTCTCTGAGGATCTTATAATTGGAATGGGAGCACATGGAGCAGTTTATAAGTGTAATTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGATCACAAGAACACCCAATTTCTTCGGGAGCTTGAAATCTTGAGCAAAATTCATCATCCCCATTTACTACTACTCCTTGGTGCGTGTCCGGACAAGCACTGCCTGGTTTATGAGTACATGGAAAACGGTAGCCTAGAGGATAGGTTGTACCGCAGAGGCAACACACCTGCAATCCCATGGTATGAGAGGTATAGGATTGCTTGGGAAATAGCCTCAGCTCTCGTCTTTCTACACAGCTCAAAGCCGAAACCAATAATACACCGTGATCTTAAGCCTGCAAACATCTTACTCGACCGAAACCTCGTGAGCAAAATCGGTGACGTCGGTCTATCTACTGTGCTTAATTCAGATCCTTTAATGTCTACTGCATTCAAGGATAGTGGACTAGTTGGAACTCTATGTTATATAGATCCTGAGTATCAACGAACTGGATTAATCTCACCCAAGTCTGATGTTTATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAGCCAGCAGTAGCATTAACCCATGTGGTGGAAACTGCCGTTGAGAGCCGCTCTTTAATAAAGGTTCTTGATATTAAGGCTGGGCATTGGCCTATTGAAGAGACGTATGAATTGGCGAGATTAGGACTTTGGTGTGCAGAGCTACAACGTAAAGATAGGCCCAACTTAAAGGATCAAGTACTTCCCTTGTTAGTGAGACTCAGAAAGGTTGCTGATGAGGCTCGCAATTCGGCCTCCAGAGTCCCACCTGCAATTCCTAACCATTTCATCTGTCCAATTCTTCTGGACGTGATGAATGACCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCGAGCGATAGAGAAATGGTTCCAAGAGAAAGATATTTCACCGGCGACGAAGTTGCCACTGCCACATAAGAATTTAATACCTAATCACGGTCTTCTGTCTTCAATTATGGAGTGGAACTCCAGAAACAAACTAATGCCATTTTGA 3708 43.23 MEREQSCSAAVKDEFHPNPHIDAQTLILKSIFFLDGVGEVIVTCNSDGLFWELVDFPESVGSGCMGIKLVPDVAAEVKFSDAYAVEFDDFGVIHKSKLAAVASCMICNEYEKQMYRFTVHSFQRSKSQPAHWALTMFTFGHEDQQTCQMWVNQINASLDLEVERPKNLLVFVNPKSGKGIGSRTWEAVAPIFLRAEINTKVIVTERAGHAFDVMASIANEDLKMYDGIVAVGGDGFFNEILNGFLLSRHLAHYPPAPSDIVDVVQAEGNYSSEAITEDVDRSEDQSPLLLSAKYGGSGLSTSQNSTVYGFDSAFDRWFRFGIIPAGSTDAIVMCSTGYRDPITSTLQIVLGKRVHLDIAQVVRWKETPTSKLEPLVRYAASFAGYGFYGDVITESEKFRWMGPRRYDYAGTRVFLRHSSYEAEVAYVDIKSEDTNTNGKRVLCCHNCSICSTKVYLQHSNTGSDSSQDETRWLKSKGRFLSIGAAKPQSSMIMEGMEEEADKDLMLLPSSSPAVAVAISGNKSSKHIIRWSLENFRHKGIISFKLIHIIPRITSVPTPMGNSIPVSQVREDVAAAYRKEMGWQTSEKLVPYKKMFAQRKVQPYSNLNYGKLNGLSSRISAHAPRYCTVYAISKGKLASIRPPDMETSVSIKDDSSEASSAHSYSSYSSSSLTGSPIVANHSRYHSVDIEEPVDRLRSSPNVSYCAQTLSRASSCKSLPTDYKSWVPDEASSSGTFNDYVSCESQADVNFELEKLRIELKHAREMYAIVQQETANATLKVSHLNKQRSKEAKKLEEINNKDVSGKEFAREKRANVEALRREANFVREGAEREGIYRKEAETKAVQDAKEKGKHESALHGYLQQYQHFEWDDIVSAASSFSEDLIIGMGAHGAVYKCNLHHTTVAVKVLHSRDDHKNTQFLRELEILSKIHHPHLLLLLGACPDKHCLVYEYMENGSLEDRLYRRGNTPAIPWYERYRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDRNLVSKIGDVGLSTVLNSDPLMSTAFKDSGLVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAVALTHVVETAVESRSLIKVLDIKAGHWPIEETYELARLGLWCAELQRKDRPNLKDQVLPLLVRLRKVADEARNSASRVPPAIPNHFICPILLDVMNDPCVAADGYTYDRRAIEKWFQEKDISPATKLPLPHKNLIPNHGLLSSIMEWNSRNKLMPF 1235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6042212 6059012 + CmoCh02G009830.1 Cmo02g00983 376580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00983 1235 SMART Ubox_2 1164 1226 IPR003613 GO:0004842|GO:0016567
Cmo02g00983 1235 SUPERFAMILY NAD kinase/diacylglycerol kinase-like 164 426 IPR016064 -
Cmo02g00983 1235 Coils Coil 751 771 - -
Cmo02g00983 1235 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 612 1227 - -
Cmo02g00983 1235 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 510 601 - -
Cmo02g00983 1235 ProSiteProfiles DAG-kinase catalytic (DAGKc) domain profile. 163 365 IPR001206 GO:0016301
Cmo02g00983 1235 SUPERFAMILY RING/U-box 1149 1232 - -
Cmo02g00983 1235 ProSiteProfiles U-box domain profile. 1160 1233 IPR003613 GO:0004842|GO:0016567
Cmo02g00983 1235 ProSitePatterns Serine/Threonine protein kinases active-site signature. 996 1008 IPR008271 GO:0004672|GO:0006468
Cmo02g00983 1235 Gene3D - 371 513 - -
Cmo02g00983 1235 ProSitePatterns Protein kinases ATP-binding region signature. 884 905 IPR017441 GO:0005524
Cmo02g00983 1235 Pfam Protein kinase domain 881 1133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00983 1235 Gene3D - 147 354 IPR017438 -
Cmo02g00983 1235 SUPERFAMILY Protein kinase-like (PK-like) 856 1136 IPR011009 -
Cmo02g00983 1235 SMART dagk_c4a_7 167 292 IPR001206 GO:0016301
Cmo02g00983 1235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1160 1233 IPR013083 -
Cmo02g00983 1235 PANTHER OS02G0152300 PROTEIN 510 601 - -
Cmo02g00983 1235 Gene3D Transferase(Phosphotransferase) domain 1 951 1157 - -
Cmo02g00983 1235 Pfam U-box domain 1161 1230 IPR003613 GO:0004842|GO:0016567
Cmo02g00983 1235 PANTHER OS02G0152300 PROTEIN 612 1227 - -
Cmo02g00983 1235 ProSiteProfiles Protein kinase domain profile. 878 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00983 1235 Pfam Diacylglycerol kinase catalytic domain 168 251 IPR001206 GO:0016301
Cmo02g00983 1235 Gene3D Phosphorylase Kinase; domain 1 847 950 - -
Cmo02g00983 1235 CDD RING-Ubox_WDSUB1_like 1165 1205 - -
Cmo02g00983 1235 SMART serkin_6 878 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g00983 1235 Coils Coil 779 799 - -
Cmo02g00983 1235 CDD STK_N 514 634 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00983 Cmo-Chr2:6042212 Cmo05g01403 Cmo-Chr5:10815069 1.14E-142 dispersed
Cmo04g01350 Cmo-Chr4:6884243 Cmo02g00983 Cmo-Chr2:6042212 4.82E-11 dispersed
Cmo18g00842 Cmo-Chr18:9780876 Cmo02g00983 Cmo-Chr2:6042212 1.99E-10 dispersed
Cmo15g01416 Cmo-Chr15:9652325 Cmo02g00983 Cmo-Chr2:6042212 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74122 PF00069 Pkinase 1.10E-39 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00983 - - mcha:111025865 1090.87