Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00991 ATGGCTTACGGCGACGACGCTTCGACCTTAGATTTCATCAGACAACACCTTCTCAGCGACTTCAACTCCATTGAAGCCTTCGCTTCAAATCTCGATTTCATCAACAATAATGGACTCACACCTCAAATCCCCGCTGCCCCTTCAAAGATCGGTCACCGCCGTCCCTCTCTCAACGTCATGATTCCACCCAAGACCCACTCTGTCCAATCCCCTGCGGCAGCGACGGCGACGGTTACGACATCTTCTGAGGTAAAATCCGATGTGGGCCTGAGTCAGCATTACAGGGGGGTTCGCCGGCGGCCATGGGGGAAGTTTGCAGCGGAGATTCGGGACCCCAACAAACGTGGAGCTCGTGTTTGGCTTGGAACTTACGATACCGCAATTGAAGCTGCCAAAGCTTATGATAGAGCTGCTTTTAAGATGAGAGGAAGTAAGGCGATTTTGAATTTTCCTCTTGAGGCTGGAAAGGAAGCAGAGGAGCCGCCGTCCACGGCAGCTGTTGGCCGGAAAAGGAGGAGGGAGAGTGAGGTTGGGGAAATGGAGAATAAGGTTGTGAAGAAGGAGGAGTCGTCGGAAACAAATGAAATCGGAGTTCCGGCGGCCATTTGTCCTCTAACGCCGTCTTGTTGGGCGCCGGTTTGGGACAATGATGGGAAGGGGATCTTCAGCGTGCCGCCGTTATCGCCTCATCCGTTAATGGGATATCCTCAATGCACCGTCACATAA 726 52.89 MAYGDDASTLDFIRQHLLSDFNSIEAFASNLDFINNNGLTPQIPAAPSKIGHRRPSLNVMIPPKTHSVQSPAAATATVTTSSEVKSDVGLSQHYRGVRRRPWGKFAAEIRDPNKRGARVWLGTYDTAIEAAKAYDRAAFKMRGSKAILNFPLEAGKEAEEPPSTAAVGRKRRRESEVGEMENKVVKKEESSETNEIGVPAAICPLTPSCWAPVWDNDGKGIFSVPPLSPHPLMGYPQCTVT 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6090085 6090810 - CmoCh02G009910.1 Cmo02g00991 376588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00991 241 MobiDBLite consensus disorder prediction 158 191 - -
Cmo02g00991 241 CDD AP2 92 151 IPR001471 GO:0003700|GO:0006355
Cmo02g00991 241 SUPERFAMILY DNA-binding domain 93 152 IPR016177 GO:0003677
Cmo02g00991 241 Gene3D AP2/ERF domain 92 153 IPR036955 GO:0003700|GO:0006355
Cmo02g00991 241 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Cmo02g00991 241 PRINTS Ethylene responsive element binding protein signature 133 153 IPR001471 GO:0003700|GO:0006355
Cmo02g00991 241 MobiDBLite consensus disorder prediction 163 191 - -
Cmo02g00991 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 39 228 - -
Cmo02g00991 241 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700|GO:0006355
Cmo02g00991 241 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 39 228 - -
Cmo02g00991 241 Pfam AP2 domain 93 143 IPR001471 GO:0003700|GO:0006355
Cmo02g00991 241 SMART rav1_2 93 157 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00991 Cmo16g00237 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00991 Cmo-Chr2:6090085 Cmo15g01422 Cmo-Chr15:9684153 7.15E-127 dispersed
Cmo02g00989 Cmo-Chr2:6085866 Cmo02g00991 Cmo-Chr2:6090085 9.36E-33 proximal
Cmo16g00237 Cmo-Chr16:1045300 Cmo02g00991 Cmo-Chr2:6090085 3.48E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9271 PF00847 AP2 1.40E-16 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00991 K09286 - csv:101221306 351.288