Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00998 ATGTCCATTTTATTAGCAATTTCCCCATCCTTCTCAGCCCCCAACGCCAAGGATTTATGGTGCAGCCAAACCCCATACCCCGACGTCTGCAAGAGCTTCTTCAACGCCAAATTCAACCCCAAAAACCTCGCCGAGTTCAAAAAAACCGCCTTCAAAATCGCCATGGAAAGGGCTCTCACCGCCGAGTCGCTCACCAAGCGCCACGCCCAGAAATGCCGCACCCCAAAGGAAAAAGGCGCGTGGGCCGACTGCTTGGAGCTCTACCAAGACACCATCCTCCAGCTCAACCGAACCTTCTCCGACAACTATTGCTCCGATTTCGACATCCAAACATGGCTCAGCTCCGCGTTGACTAATCTCGAGACATGTCGTGCCGGATTCGTTGACCTTAATATTAAGGATTACGACGTCGTTTTTCCTTTTCTTGGGAGGAGTAATAATGTGACTAAGTTGATTAGGAATAGTTTGGCTATGAATAACTGCTCTGAGACGGAGACGGGTTATCATGGTGGGTTTCCTACGTGGGTTAAGGCTGGTGAACGGCGGCTGCTGCAGGCGGCGGTTCCTAAGGCGGACTTGGTTGTGGCGCTTGATGGGTCTGGGAATTATAAGACGGTGCAGGCGGCGGTGGATGCGGCGGCCAAGAGGAAAGGGAGTGGGAGATTTGTGATACATGTTAAGAAAGGGGTTTATAAAGAGAATGTTGTGATTGGGAATAAGGTCAAGAATTTGATGCTCGTCGGAGATGGGTTGAAGTATACCATTATTACTGGGAGTAGGAGTGTCCGCGGCGGCTCCACCACGTTCAACTCCGCCACCGTTGCTGTTACTGGGGAAGGATTCATTGCTCGTGGCATCACCTTCCGCAACACAGCCGGACCTCAAAACCACCAAGCAGTAGCTCTTCGATCGGGCTCGGATCTCTCCGTCTTCTACCGCTGCGGCTTCGAGGGATATCAAGACACTCTCTACGTCCACTCCCAAAGACAATTCTACAAAGAATGCTACATTTACGGCACAGTAGACTTCATCTTCGGCAACGCAGCCGTGGTACTCCAAAACTGCATGATCTACGCGAGAAAACCAATGTCAGGTCAGCAATGCGTGGTAACAGCGCAAGGCCGATCGGACCCAAATCAGAACACCGGAATCTCAATCCACAACTCGAGAGTGATGGCCACGGCCGACCTCCAACCGGTGCTAAGCTCGGTGAGAACCTATCTGGGGAGGCCATGGAAGGAGTACTCCCGGACGGTTTACATGCAGTGCTTCATGGATAGCTTGGTGAACCCTGCAGGGTGGCTGGAATGGAGCGGGGACTTTGCCCTGAATACGCTCTATTATGGAGAGTTCAAGAACTTTGGCCCTGGTTCGTCCACTGCTAAGCGAGTGAAGTGGAAGGGTTACAGAGTGATTACAAGCGCCGCCGAAGCTTCCAAGTTTACCGTCGGGAGCTTCATCGCCGGGAAGTCATGGCTGCCGGCAACCGGCGTTCCGTTCACTGCTGGGCTTTGA 1515 52.61 MSILLAISPSFSAPNAKDLWCSQTPYPDVCKSFFNAKFNPKNLAEFKKTAFKIAMERALTAESLTKRHAQKCRTPKEKGAWADCLELYQDTILQLNRTFSDNYCSDFDIQTWLSSALTNLETCRAGFVDLNIKDYDVVFPFLGRSNNVTKLIRNSLAMNNCSETETGYHGGFPTWVKAGERRLLQAAVPKADLVVALDGSGNYKTVQAAVDAAAKRKGSGRFVIHVKKGVYKENVVIGNKVKNLMLVGDGLKYTIITGSRSVRGGSTTFNSATVAVTGEGFIARGITFRNTAGPQNHQAVALRSGSDLSVFYRCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARKPMSGQQCVVTAQGRSDPNQNTGISIHNSRVMATADLQPVLSSVRTYLGRPWKEYSRTVYMQCFMDSLVNPAGWLEWSGDFALNTLYYGEFKNFGPGSSTAKRVKWKGYRVITSAAEASKFTVGSFIAGKSWLPATGVPFTAGL 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6110312 6112527 - CmoCh02G009980.1 Cmo02g00998 376595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00998 504 SUPERFAMILY Pectin lyase-like 187 503 IPR011050 -
Cmo02g00998 504 ProSitePatterns Pectinesterase signature 1. 218 237 IPR018040 -
Cmo02g00998 504 Pfam Pectinesterase 192 489 IPR000070 GO:0030599|GO:0042545
Cmo02g00998 504 Pfam Plant invertase/pectin methylesterase inhibitor 20 158 IPR006501 GO:0004857
Cmo02g00998 504 Gene3D Invertase/pectin methylesterase inhibitor family protein 18 161 IPR035513 -
Cmo02g00998 504 CDD PMEI-like_3 19 160 - -
Cmo02g00998 504 ProSitePatterns Pectinesterase signature 2. 337 346 IPR033131 -
Cmo02g00998 504 SMART PMEI_2 12 158 IPR006501 GO:0004857
Cmo02g00998 504 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 20 161 IPR035513 -
Cmo02g00998 504 TIGRFAM PME_inhib: pectinesterase inhibitor domain 20 160 IPR006501 GO:0004857
Cmo02g00998 504 PANTHER PECTINESTERASE 5 503 - -
Cmo02g00998 504 Gene3D - 187 504 IPR012334 -
Cmo02g00998 504 PANTHER PECTINESTERASE 5 503 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00998 Cmo-Chr2:6110312 Cmo06g01176 Cmo-Chr6:8999851 0 dispersed
Cmo16g00198 Cmo-Chr16:874726 Cmo02g00998 Cmo-Chr2:6110312 2.47E-23 dispersed
Cmo20g01074 Cmo-Chr20:9934282 Cmo02g00998 Cmo-Chr2:6110312 4.49E-103 dispersed
Cmo20g01147 Cmo-Chr20:11262277 Cmo02g00998 Cmo-Chr2:6110312 5.33E-117 dispersed
Cmo02g00998 Cmo-Chr2:6110312 Cmo04g00349 Cmo-Chr4:1702527 2.26E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00998 K01051 - csv:101216005 833.172